Magnesium in PDB 6obj: Structure of A Dna-Bound Dimer Extracted From Filamentous Sgrai Endonuclease in Its Activated Form

The binding sites of Magnesium atom in the Structure of A Dna-Bound Dimer Extracted From Filamentous Sgrai Endonuclease in Its Activated Form (pdb code 6obj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of A Dna-Bound Dimer Extracted From Filamentous Sgrai Endonuclease in Its Activated Form, PDB code: 6obj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of A Dna-Bound Dimer Extracted From Filamentous Sgrai Endonuclease in Its Activated Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Dna-Bound Dimer Extracted From Filamentous Sgrai Endonuclease in Its Activated Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg500 b:47.9 occ:1.00 O A:PHE241 2.7 61.0 1.0 OP2 C:DC13 3.0 52.5 1.0 O5' C:DC12 3.3 52.1 1.0 OD2 A:ASP188 3.3 66.8 1.0 CG A:LYS242 3.5 56.8 1.0 O3' C:DA11 3.5 64.9 1.0 C A:PHE241 3.8 61.0 1.0 CG A:ASP188 4.3 66.8 1.0 NZ A:LYS242 4.3 56.8 1.0 CD A:LYS242 4.3 56.8 1.0 P C:DC13 4.4 52.5 1.0 C5' C:DC12 4.4 52.1 1.0 OD1 A:ASP188 4.4 66.8 1.0 CA A:LYS242 4.5 56.8 1.0 N A:LYS242 4.6 56.8 1.0 CB A:LYS242 4.6 56.8 1.0 N A:PHE241 4.7 61.0 1.0 C3' C:DA11 4.8 64.9 1.0 CA A:PHE241 4.8 61.0 1.0 CE A:LYS242 5.0 56.8 1.0 O3' C:DC12 5.0 52.1 1.0

Magnesium binding site 2 out of 2 in the Structure of A Dna-Bound Dimer Extracted From Filamentous Sgrai Endonuclease in Its Activated Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Dna-Bound Dimer Extracted From Filamentous Sgrai Endonuclease in Its Activated Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg500 b:47.9 occ:1.00 O B:PHE241 2.7 61.0 1.0 OP2 D:DC13 3.0 52.5 1.0 O5' D:DC12 3.3 52.1 1.0 OD2 B:ASP188 3.3 66.8 1.0 CG B:LYS242 3.5 56.8 1.0 O3' D:DA11 3.5 64.9 1.0 C B:PHE241 3.8 61.0 1.0 CG B:ASP188 4.3 66.8 1.0 NZ B:LYS242 4.3 56.8 1.0 CD B:LYS242 4.3 56.8 1.0 P D:DC13 4.4 52.5 1.0 C5' D:DC12 4.4 52.1 1.0 OD1 B:ASP188 4.4 66.8 1.0 CA B:LYS242 4.5 56.8 1.0 N B:LYS242 4.6 56.8 1.0 CB B:LYS242 4.6 56.8 1.0 N B:PHE241 4.7 61.0 1.0 C3' D:DA11 4.8 64.9 1.0 CA B:PHE241 4.8 61.0 1.0 CE B:LYS242 5.0 56.8 1.0 O3' D:DC12 5.0 52.1 1.0

S.Polley, D.Lyumkis, N.C.Horton. Structure of A Dna-Bound Dimer Extracted From Filamentous Sgrai Endonuclease in Its Activated Form To Be Published.