Magnesium in PDB 6oew: Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197)

Protein crystallography data

The structure of Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197), PDB code: 6oew was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.67 / 1.85
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 65.510, 65.510, 261.930, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 21.5

Other elements in 6oew:

The structure of Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) (pdb code 6oew). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197), PDB code: 6oew:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6oew

Go back to Magnesium Binding Sites List in 6oew
Magnesium binding site 1 out of 2 in the Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:59.9
occ:1.00
OD2 A:ASP100 1.9 52.0 1.0
O A:HOH416 2.4 43.1 1.0
O A:HOH564 2.4 57.3 1.0
O A:HOH408 2.5 43.8 1.0
CG A:ASP100 2.9 41.1 1.0
OD1 A:ASP100 3.4 41.1 1.0
O A:HOH516 4.0 49.2 1.0
O A:HOH555 4.1 52.0 1.0
CB A:ASP100 4.2 43.8 1.0
OD1 A:ASP194 4.3 42.0 1.0
OG1 A:THR98 4.4 52.0 1.0
OD2 A:ASP194 4.5 43.2 1.0
OG1 A:THR192 4.5 60.4 1.0
CG A:ASP194 4.8 41.9 1.0
O A:HOH420 4.9 50.5 1.0

Magnesium binding site 2 out of 2 in 6oew

Go back to Magnesium Binding Sites List in 6oew
Magnesium binding site 2 out of 2 in the Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:32.3
occ:1.00
O B:HOH579 2.0 39.4 1.0
OD2 B:ASP100 2.1 27.9 1.0
O B:HOH421 2.2 30.6 1.0
O B:HOH439 2.2 33.1 1.0
O B:HOH423 2.2 33.5 1.0
O B:HOH560 2.3 41.0 1.0
CG B:ASP100 3.2 29.2 1.0
OD1 B:ASP100 3.6 29.6 1.0
O B:HOH454 4.0 33.6 1.0
OD2 B:ASP194 4.2 30.7 1.0
OG1 B:THR192 4.3 37.3 1.0
OD1 B:ASP194 4.3 27.4 1.0
O B:HOH502 4.4 35.9 1.0
CB B:ASP100 4.5 27.7 1.0
O B:HOH473 4.5 42.9 1.0
O B:HOH532 4.5 49.3 1.0
CG2 B:THR98 4.6 24.6 1.0
O B:HOH539 4.6 50.9 1.0
O B:HOH501 4.6 43.6 1.0
CG B:ASP194 4.7 29.0 1.0
O B:HOH587 4.9 60.0 1.0

Reference:

J.Abendroth, D.Fox Iii, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Structure of A Cytidylyltransferase From Leptospira Borgpetersenii Serovar Hardjo-Bovis (Strain JB197) To Be Published.
Page generated: Mon Dec 14 23:42:59 2020

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