Magnesium in PDB 6of3: Precursor Ribosomal Rna Processing Complex, State 1.

The binding sites of Magnesium atom in the Precursor Ribosomal Rna Processing Complex, State 1. (pdb code 6of3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Precursor Ribosomal Rna Processing Complex, State 1., PDB code: 6of3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Precursor Ribosomal Rna Processing Complex, State 1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Precursor Ribosomal Rna Processing Complex, State 1. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:0.5 occ:1.00 O2B B:AGS801 2.1 0.3 1.0 O3G B:AGS801 2.1 0.3 1.0 OG B:SER275 2.2 0.1 1.0 PG B:AGS801 2.7 0.3 1.0 S1G B:AGS801 2.8 0.3 1.0 O3B B:AGS801 3.0 0.3 1.0 PB B:AGS801 3.1 0.3 1.0 O2A B:AGS801 3.1 0.3 1.0 CB B:SER275 3.2 0.1 1.0 N B:SER275 4.0 0.1 1.0 PA B:AGS801 4.1 0.3 1.0 O3A B:AGS801 4.1 0.3 1.0 O2G B:AGS801 4.2 0.3 1.0 CA B:SER275 4.2 0.1 1.0 O1B B:AGS801 4.2 0.3 1.0 O1A B:AGS801 4.6 0.3 1.0 CE B:LYS274 4.7 0.9 1.0 NE2 B:GLN309 4.7 88.8 1.0 CB B:LYS274 5.0 0.9 1.0

Magnesium binding site 2 out of 2 in the Precursor Ribosomal Rna Processing Complex, State 1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Precursor Ribosomal Rna Processing Complex, State 1. within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg802 b:0.7 occ:1.00 O2B E:AGS801 2.1 0.4 1.0 O3G E:AGS801 2.1 0.4 1.0 OG E:SER275 2.2 0.0 1.0 PG E:AGS801 2.7 0.4 1.0 S1G E:AGS801 2.8 0.4 1.0 O3B E:AGS801 3.0 0.4 1.0 PB E:AGS801 3.1 0.4 1.0 O2A E:AGS801 3.1 0.4 1.0 CB E:SER275 3.2 0.0 1.0 N E:SER275 4.0 0.0 1.0 PA E:AGS801 4.1 0.4 1.0 O3A E:AGS801 4.1 0.4 1.0 O2G E:AGS801 4.2 0.4 1.0 CA E:SER275 4.2 0.0 1.0 O1B E:AGS801 4.2 0.4 1.0 O1A E:AGS801 4.6 0.4 1.0 CE E:LYS274 4.7 0.5 1.0 NE2 E:GLN309 4.7 88.3 1.0 CB E:LYS274 5.0 0.5 1.0

M.C.Pillon, A.L.Hsu, J.M.Krahn, J.G.Williams, K.H.Goslen, M.Sobhany, M.J.Borgnia, R.E.Stanley. Cryo-Em Reveals Active Site Coordination Within A Multienzyme Pre-Rrna Processing Complex. Nat.Struct.Mol.Biol. V. 26 830 2019.
ISSN: ESSN 1545-9985
PubMed: 31488907
DOI: 10.1038/S41594-019-0289-8