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Magnesium in PDB 6oh7: Crystal Structure of (E)-Biformene Synthase Lrdc From Streptomyces Sp. Strain K155 in Complex with Mg

Enzymatic activity of Crystal Structure of (E)-Biformene Synthase Lrdc From Streptomyces Sp. Strain K155 in Complex with Mg

All present enzymatic activity of Crystal Structure of (E)-Biformene Synthase Lrdc From Streptomyces Sp. Strain K155 in Complex with Mg:
4.2.3.193;

Protein crystallography data

The structure of Crystal Structure of (E)-Biformene Synthase Lrdc From Streptomyces Sp. Strain K155 in Complex with Mg, PDB code: 6oh7 was solved by S.Centeno-Leija, H.Serrano-Posada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.62 / 2.19
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 107.050, 107.050, 89.241, 90.00, 90.00, 120.00
R / Rfree (%) 23.4 / 26.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of (E)-Biformene Synthase Lrdc From Streptomyces Sp. Strain K155 in Complex with Mg (pdb code 6oh7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of (E)-Biformene Synthase Lrdc From Streptomyces Sp. Strain K155 in Complex with Mg, PDB code: 6oh7:

Magnesium binding site 1 out of 1 in 6oh7

Go back to Magnesium Binding Sites List in 6oh7
Magnesium binding site 1 out of 1 in the Crystal Structure of (E)-Biformene Synthase Lrdc From Streptomyces Sp. Strain K155 in Complex with Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of (E)-Biformene Synthase Lrdc From Streptomyces Sp. Strain K155 in Complex with Mg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg504

b:51.0
occ:0.45
 O A:HOH622 2.0 49.4 1.0
O A:HOH601 2.0 54.6 1.0
O A:HOH667 2.0 57.1 1.0
OD2 A:ASP90 2.1 39.2 1.0
OE2 A:GLU95 2.1 51.3 1.0
CG A:ASP90 3.0 39.7 1.0
OD1 A:ASP90 3.2 44.9 1.0
CD A:GLU95 3.2 67.8 1.0
OE1 A:GLU165 3.8 42.1 1.0
O A:HOH719 3.8 54.6 1.0
OE1 A:GLU95 3.9 68.2 1.0
OE2 A:GLU165 4.0 55.5 1.0
O A:THR187 4.1 34.5 1.0
CD2 A:LEU162 4.2 25.7 1.0
O A:HOH637 4.2 47.1 1.0
CD A:GLU165 4.3 45.7 1.0
CG A:GLU95 4.3 64.0 1.0
O A:HOH713 4.4 53.9 1.0
CB A:ASP90 4.4 38.4 1.0
CB A:THR187 4.6 37.5 1.0
NH1 A:ARG184 4.9 34.9 1.0

Reference:

S.Centeno-Leija, S.Tapia-Cabrera, S.Guzman-Trampe, B.Esquivel, N.Esturau-Escofet, V.H.Tierrafria, R.Rodriguez-Sanoja, A.Zarate-Romero, V.Stojanoff, E.Rudino-Pinera, S.Sanchez, H.Serrano-Posada. The Structure of (E)-Biformene Synthase Provides Insights Into the Biosynthesis of Bacterial Bicyclic Labdane-Related Diterpenoids. J.Struct.Biol. V. 207 29 2019.
ISSN: ESSN 1095-8657
PubMed: 30981884
DOI: 10.1016/J.JSB.2019.04.010
Page generated: Tue Oct 1 13:23:18 2024

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