Magnesium in PDB 6oim: Crystal Structure of Human Kras G12C Covalently Bound to Amg 510

Protein crystallography data

The structure of Crystal Structure of Human Kras G12C Covalently Bound to Amg 510, PDB code: 6oim was solved by C.Mohr, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.868, 58.417, 65.884, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 21.5

Other elements in 6oim:

The structure of Crystal Structure of Human Kras G12C Covalently Bound to Amg 510 also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Kras G12C Covalently Bound to Amg 510 (pdb code 6oim). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Kras G12C Covalently Bound to Amg 510, PDB code: 6oim:

Magnesium binding site 1 out of 1 in 6oim

Go back to Magnesium Binding Sites List in 6oim
Magnesium binding site 1 out of 1 in the Crystal Structure of Human Kras G12C Covalently Bound to Amg 510


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Kras G12C Covalently Bound to Amg 510 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:20.2
occ:1.00
O2B A:GDP302 2.2 19.3 1.0
O A:HOH405 2.2 18.4 1.0
O A:HOH447 2.2 20.5 1.0
OG A:SER17 2.2 18.7 1.0
O A:HOH415 2.2 19.0 1.0
O A:HOH440 2.2 20.2 1.0
CB A:SER17 3.2 17.9 1.0
PB A:GDP302 3.3 19.7 1.0
O1B A:GDP302 3.6 20.1 1.0
OD2 A:ASP57 4.0 19.2 1.0
N A:SER17 4.0 17.7 1.0
O1A A:GDP302 4.1 21.1 1.0
CA A:SER17 4.1 17.6 1.0
OD1 A:ASP57 4.2 18.8 1.0
O A:PRO34 4.3 24.2 1.0
O A:ASP33 4.3 24.2 1.0
CA A:PRO34 4.3 24.9 1.0
O3A A:GDP302 4.4 20.3 1.0
O3B A:GDP302 4.4 20.2 1.0
CG A:ASP57 4.5 18.7 1.0
O A:THR58 4.5 18.3 1.0
O A:ILE36 4.5 21.5 1.0
PA A:GDP302 4.5 20.4 1.0
C A:PRO34 4.6 24.3 1.0
CB A:ALA59 4.6 20.4 1.0
O2A A:GDP302 4.7 20.9 1.0
CD2 A:TYR32 4.8 27.6 1.0
O A:HOH428 4.9 23.8 1.0
O A:TYR32 4.9 27.2 1.0
O2 A:MOV303 4.9 25.2 1.0
CB A:LYS16 5.0 17.5 1.0

Reference:

J.Canon, K.Rex, A.Y.Saiki, C.Mohr, K.Cooke, D.Bagal, K.Gaida, T.Holt, C.G.Knutson, N.Koppada, B.A.Lanman, J.Werner, A.S.Rapaport, T.San Miguel, R.Ortiz, T.Osgood, J.R.Sun, X.Zhu, J.D.Mccarter, L.P.Volak, B.E.Houk, M.G.Fakih, B.H.O'neil, T.J.Price, G.S.Falchook, J.Desai, J.Kuo, R.Govindan, D.S.Hong, W.Ouyang, H.Henary, T.Arvedson, V.J.Cee, J.R.Lipford. The Clinical Kras(G12C) Inhibitor Amg 510 Drives Anti-Tumour Immunity. Nature V. 575 217 2019.
ISSN: ESSN 1476-4687
PubMed: 31666701
DOI: 10.1038/S41586-019-1694-1
Page generated: Mon Dec 14 23:43:07 2020

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