Magnesium in PDB 6ojq: Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule

The binding sites of Magnesium atom in the Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule (pdb code 6ojq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule, PDB code: 6ojq:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:0.8 occ:1.00 HG1 B:THR145 1.8 0.8 1.0 O1G B:G2P501 2.0 0.1 1.0 O3B B:G2P501 2.2 0.1 1.0 HB B:THR145 2.3 0.8 1.0 PG B:G2P501 2.4 0.1 1.0 O2B B:G2P501 2.5 0.1 1.0 OG1 B:THR145 2.5 0.8 1.0 PB B:G2P501 2.8 0.1 1.0 CB B:THR145 2.8 0.8 1.0 O3G B:G2P501 2.9 0.1 1.0 HG21 B:THR145 3.2 0.8 1.0 H3A1 B:G2P501 3.4 0.1 1.0 CG2 B:THR145 3.5 0.8 1.0 C3A B:G2P501 3.8 0.1 1.0 H B:THR145 3.8 0.8 1.0 HG22 B:THR145 3.8 0.8 1.0 O2G B:G2P501 3.8 0.1 1.0 H B:GLN11 4.0 0.4 1.0 HA2 B:GLY10 4.1 0.1 1.0 OD1 B:ASP69 4.1 0.4 1.0 CA B:THR145 4.2 0.8 1.0 O1B B:G2P501 4.2 0.1 1.0 H B:GLY146 4.3 0.6 1.0 H B:ALA99 4.3 0.7 1.0 HG23 B:THR145 4.4 0.8 1.0 HB3 B:ALA99 4.4 0.7 1.0 N B:THR145 4.4 0.8 1.0 H3A2 B:G2P501 4.4 0.1 1.0 HB2 B:GLN11 4.5 0.4 1.0 N B:GLN11 4.7 0.4 1.0 HA B:THR145 4.8 0.8 1.0 H B:LEU70 4.8 0.9 1.0 O1A B:G2P501 4.8 0.1 1.0 N B:GLY146 4.8 0.6 1.0 H B:GLY100 4.9 0.3 1.0 HG3 B:GLU71 5.0 1.0 1.0 CA B:GLY10 5.0 0.1 1.0

Magnesium binding site 2 out of 2 in the Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:0.8 occ:1.00 O2G A:GTP501 2.0 0.8 1.0 O1B A:GTP501 2.0 0.8 1.0 OE2 A:GLU71 2.1 0.3 1.0 O3G A:GTP501 2.3 0.8 1.0 PG A:GTP501 2.4 0.8 1.0 CD A:GLU71 2.6 0.3 1.0 PB A:GTP501 2.7 0.8 1.0 O3B A:GTP501 2.9 0.8 1.0 HZ1 B:LYS254 2.9 0.1 1.0 O3A A:GTP501 3.1 0.8 1.0 OE1 A:GLU71 3.2 0.3 1.0 HG3 A:GLU71 3.2 0.3 1.0 CG A:GLU71 3.5 0.3 1.0 NZ B:LYS254 3.8 0.1 1.0 O1G A:GTP501 3.9 0.8 1.0 H A:GLN11 4.0 0.5 1.0 HG2 A:GLU71 4.0 0.3 1.0 O1A A:GTP501 4.1 0.8 1.0 HZ2 B:LYS254 4.1 0.1 1.0 PA A:GTP501 4.1 0.8 1.0 HZ3 B:LYS254 4.1 0.1 1.0 O2B A:GTP501 4.2 0.8 1.0 HB2 A:GLN11 4.2 0.5 1.0 HB2 A:ASP98 4.2 0.6 1.0 HG1 A:THR145 4.3 0.3 1.0 HB2 A:GLU71 4.5 0.3 1.0 HB3 A:GLN11 4.5 0.5 1.0 HE2 B:LYS254 4.6 0.1 1.0 HE3 B:LYS254 4.6 0.1 1.0 O2A A:GTP501 4.6 0.8 1.0 CE B:LYS254 4.6 0.1 1.0 CB A:GLU71 4.6 0.3 1.0 OG1 A:THR145 4.7 0.3 1.0 HA2 A:GLY10 4.7 0.0 1.0 HB A:THR145 4.7 0.3 1.0 N A:GLN11 4.8 0.5 1.0 CB A:GLN11 4.8 0.5 1.0 H A:ALA100 4.9 0.3 1.0 OE1 A:GLN11 4.9 0.5 1.0 OD1 A:ASP69 5.0 0.6 1.0

H.K.Cha, G.Debs, X.Liu, D.Liu, C.V.Sindelar. Structural Intermediates of the Dimeric Kinesin Stepping Cycle Revealed By Cryo-Em To Be Published.