Magnesium in PDB 6ojq: Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule (pdb code 6ojq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule, PDB code: 6ojq:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6ojq

Go back to Magnesium Binding Sites List in 6ojq
Magnesium binding site 1 out of 2 in the Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:0.8
occ:1.00
HG1 B:THR145 1.8 0.8 1.0
O1G B:G2P501 2.0 0.1 1.0
O3B B:G2P501 2.2 0.1 1.0
HB B:THR145 2.3 0.8 1.0
PG B:G2P501 2.4 0.1 1.0
O2B B:G2P501 2.5 0.1 1.0
OG1 B:THR145 2.5 0.8 1.0
PB B:G2P501 2.8 0.1 1.0
CB B:THR145 2.8 0.8 1.0
O3G B:G2P501 2.9 0.1 1.0
HG21 B:THR145 3.2 0.8 1.0
H3A1 B:G2P501 3.4 0.1 1.0
CG2 B:THR145 3.5 0.8 1.0
C3A B:G2P501 3.8 0.1 1.0
H B:THR145 3.8 0.8 1.0
HG22 B:THR145 3.8 0.8 1.0
O2G B:G2P501 3.8 0.1 1.0
H B:GLN11 4.0 0.4 1.0
HA2 B:GLY10 4.1 0.1 1.0
OD1 B:ASP69 4.1 0.4 1.0
CA B:THR145 4.2 0.8 1.0
O1B B:G2P501 4.2 0.1 1.0
H B:GLY146 4.3 0.6 1.0
H B:ALA99 4.3 0.7 1.0
HG23 B:THR145 4.4 0.8 1.0
HB3 B:ALA99 4.4 0.7 1.0
N B:THR145 4.4 0.8 1.0
H3A2 B:G2P501 4.4 0.1 1.0
HB2 B:GLN11 4.5 0.4 1.0
N B:GLN11 4.7 0.4 1.0
HA B:THR145 4.8 0.8 1.0
H B:LEU70 4.8 0.9 1.0
O1A B:G2P501 4.8 0.1 1.0
N B:GLY146 4.8 0.6 1.0
H B:GLY100 4.9 0.3 1.0
HG3 B:GLU71 5.0 1.0 1.0
CA B:GLY10 5.0 0.1 1.0

Magnesium binding site 2 out of 2 in 6ojq

Go back to Magnesium Binding Sites List in 6ojq
Magnesium binding site 2 out of 2 in the Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Monomeric Kinesin-1 Motor Domain in No-Nucleotide State Bound to Gmpcpp-Stabilized Microtubule within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:0.8
occ:1.00
O2G A:GTP501 2.0 0.8 1.0
O1B A:GTP501 2.0 0.8 1.0
OE2 A:GLU71 2.1 0.3 1.0
O3G A:GTP501 2.3 0.8 1.0
PG A:GTP501 2.4 0.8 1.0
CD A:GLU71 2.6 0.3 1.0
PB A:GTP501 2.7 0.8 1.0
O3B A:GTP501 2.9 0.8 1.0
HZ1 B:LYS254 2.9 0.1 1.0
O3A A:GTP501 3.1 0.8 1.0
OE1 A:GLU71 3.2 0.3 1.0
HG3 A:GLU71 3.2 0.3 1.0
CG A:GLU71 3.5 0.3 1.0
NZ B:LYS254 3.8 0.1 1.0
O1G A:GTP501 3.9 0.8 1.0
H A:GLN11 4.0 0.5 1.0
HG2 A:GLU71 4.0 0.3 1.0
O1A A:GTP501 4.1 0.8 1.0
HZ2 B:LYS254 4.1 0.1 1.0
PA A:GTP501 4.1 0.8 1.0
HZ3 B:LYS254 4.1 0.1 1.0
O2B A:GTP501 4.2 0.8 1.0
HB2 A:GLN11 4.2 0.5 1.0
HB2 A:ASP98 4.2 0.6 1.0
HG1 A:THR145 4.3 0.3 1.0
HB2 A:GLU71 4.5 0.3 1.0
HB3 A:GLN11 4.5 0.5 1.0
HE2 B:LYS254 4.6 0.1 1.0
HE3 B:LYS254 4.6 0.1 1.0
O2A A:GTP501 4.6 0.8 1.0
CE B:LYS254 4.6 0.1 1.0
CB A:GLU71 4.6 0.3 1.0
OG1 A:THR145 4.7 0.3 1.0
HA2 A:GLY10 4.7 0.0 1.0
HB A:THR145 4.7 0.3 1.0
N A:GLN11 4.8 0.5 1.0
CB A:GLN11 4.8 0.5 1.0
H A:ALA100 4.9 0.3 1.0
OE1 A:GLN11 4.9 0.5 1.0
OD1 A:ASP69 5.0 0.6 1.0

Reference:

H.K.Cha, G.Debs, X.Liu, D.Liu, C.V.Sindelar. Structural Intermediates of the Dimeric Kinesin Stepping Cycle Revealed By Cryo-Em To Be Published.
Page generated: Mon Dec 14 23:43:14 2020

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