Atomistry » Magnesium » PDB 6oiw-6oqv » 6okv
Atomistry »
  Magnesium »
    PDB 6oiw-6oqv »
      6okv »

Magnesium in PDB 6okv: PILT4 From Geobacter Metallireducens Bound to Amp-Pnp: C2CCOCCO Conformation

Protein crystallography data

The structure of PILT4 From Geobacter Metallireducens Bound to Amp-Pnp: C2CCOCCO Conformation, PDB code: 6okv was solved by M.Mccallum, P.L.Howell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.26 / 4.01
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 98.510, 127.130, 187.260, 90.00, 90.00, 90.00
R / Rfree (%) 24.4 / 28

Magnesium Binding Sites:

The binding sites of Magnesium atom in the PILT4 From Geobacter Metallireducens Bound to Amp-Pnp: C2CCOCCO Conformation (pdb code 6okv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the PILT4 From Geobacter Metallireducens Bound to Amp-Pnp: C2CCOCCO Conformation, PDB code: 6okv:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 6okv

Go back to Magnesium Binding Sites List in 6okv
Magnesium binding site 1 out of 4 in the PILT4 From Geobacter Metallireducens Bound to Amp-Pnp: C2CCOCCO Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of PILT4 From Geobacter Metallireducens Bound to Amp-Pnp: C2CCOCCO Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:53.5
occ:1.00
O2G A:ANP402 1.9 54.7 1.0
O2B A:ANP402 2.0 53.1 1.0
OG A:SER138 2.1 62.1 1.0
PG A:ANP402 3.1 55.2 1.0
CB A:SER138 3.2 62.5 1.0
PB A:ANP402 3.2 53.5 1.0
OE2 A:GLU164 3.5 66.8 1.0
N3B A:ANP402 3.5 54.6 0.7
OE1 A:GLU164 3.6 67.1 1.0
O3G A:ANP402 3.9 55.3 0.9
CD A:GLU164 4.0 67.0 1.0
O1B A:ANP402 4.0 53.4 0.9
N A:SER138 4.0 66.1 1.0
O1A A:ANP402 4.1 53.0 0.9
CA A:SER138 4.1 65.2 1.0
O1G A:ANP402 4.2 56.0 0.8
O3A A:ANP402 4.5 53.2 0.9
PA A:ANP402 4.9 52.7 1.0

Magnesium binding site 2 out of 4 in 6okv

Go back to Magnesium Binding Sites List in 6okv
Magnesium binding site 2 out of 4 in the PILT4 From Geobacter Metallireducens Bound to Amp-Pnp: C2CCOCCO Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of PILT4 From Geobacter Metallireducens Bound to Amp-Pnp: C2CCOCCO Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:60.9
occ:1.00
O2G B:ANP402 1.9 61.2 1.0
O2B B:ANP402 1.9 61.6 1.0
OG B:SER138 2.0 81.5 1.0
PG B:ANP402 3.1 61.9 1.0
PB B:ANP402 3.2 62.2 1.0
CB B:SER138 3.2 81.5 1.0
OE2 B:GLU164 3.3 88.5 1.0
OE1 B:GLU164 3.4 87.7 1.0
N3B B:ANP402 3.4 62.4 0.7
CD B:GLU164 3.7 88.3 1.0
O1A B:ANP402 3.9 62.1 0.9
O3G B:ANP402 3.9 61.8 0.9
O1B B:ANP402 4.0 62.2 0.9
N B:SER138 4.1 81.0 1.0
O1G B:ANP402 4.2 62.1 0.8
CA B:SER138 4.2 80.6 1.0
O3A B:ANP402 4.4 62.7 0.9
PA B:ANP402 4.7 62.6 1.0

Magnesium binding site 3 out of 4 in 6okv

Go back to Magnesium Binding Sites List in 6okv
Magnesium binding site 3 out of 4 in the PILT4 From Geobacter Metallireducens Bound to Amp-Pnp: C2CCOCCO Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of PILT4 From Geobacter Metallireducens Bound to Amp-Pnp: C2CCOCCO Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg401

b:96.9
occ:1.00
O2G D:ANP402 2.0 98.2 1.0
O2B D:ANP402 2.0 96.7 1.0
OG D:SER138 2.1 63.2 1.0
CB D:SER138 3.1 63.5 1.0
PG D:ANP402 3.2 98.8 1.0
OE2 D:GLU164 3.2 74.2 1.0
OE1 D:GLU164 3.2 77.1 1.0
PB D:ANP402 3.3 97.3 1.0
N3B D:ANP402 3.6 98.3 0.7
CD D:GLU164 3.6 75.0 1.0
O1A D:ANP402 3.9 96.3 0.9
O3G D:ANP402 4.0 99.2 0.9
N D:SER138 4.1 61.4 1.0
O1B D:ANP402 4.1 97.2 0.9
CA D:SER138 4.1 62.3 1.0
O1G D:ANP402 4.3 99.6 0.8
O3A D:ANP402 4.5 96.9 0.9
PA D:ANP402 4.8 96.3 1.0
NH2 D:ARG83 4.8 81.0 1.0

Magnesium binding site 4 out of 4 in 6okv

Go back to Magnesium Binding Sites List in 6okv
Magnesium binding site 4 out of 4 in the PILT4 From Geobacter Metallireducens Bound to Amp-Pnp: C2CCOCCO Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of PILT4 From Geobacter Metallireducens Bound to Amp-Pnp: C2CCOCCO Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg401

b:60.2
occ:1.00
O2G E:ANP402 1.9 60.3 1.0
O2B E:ANP402 1.9 60.7 1.0
OG E:SER138 2.0 64.1 1.0
PG E:ANP402 3.1 60.7 1.0
PB E:ANP402 3.2 61.1 1.0
CB E:SER138 3.2 66.6 1.0
OE1 E:GLU164 3.4 63.7 1.0
OE2 E:GLU164 3.4 60.0 1.0
N3B E:ANP402 3.4 61.1 0.7
CD E:GLU164 3.8 62.1 1.0
O3G E:ANP402 3.9 60.9 0.9
O1A E:ANP402 4.0 60.8 0.9
O1B E:ANP402 4.0 61.4 0.9
N E:SER138 4.0 63.0 1.0
CA E:SER138 4.1 64.1 1.0
O1G E:ANP402 4.2 60.6 0.8
O3A E:ANP402 4.4 61.4 0.9
PA E:ANP402 4.8 61.2 1.0
NZ E:LYS137 5.0 61.7 1.0

Reference:

M.Mccallum, S.Benlekbir, S.Nguyen, S.Tammam, J.L.Rubinstein, L.L.Burrows, P.L.Howell. Multiple Conformations Facilitate Pilt Function in the Type IV Pilus. Nat Commun V. 10 5198 2019.
ISSN: ESSN 2041-1723
PubMed: 31729381
DOI: 10.1038/S41467-019-13070-Z
Page generated: Tue Oct 1 13:25:51 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy