Magnesium in PDB 6omv: Cryoem Structure of the LBCAS12A-Crrna-ACRVA4-Dna Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryoem Structure of the LBCAS12A-Crrna-ACRVA4-Dna Complex (pdb code 6omv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryoem Structure of the LBCAS12A-Crrna-ACRVA4-Dna Complex, PDB code: 6omv:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6omv

Go back to Magnesium Binding Sites List in 6omv
Magnesium binding site 1 out of 2 in the Cryoem Structure of the LBCAS12A-Crrna-ACRVA4-Dna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the LBCAS12A-Crrna-ACRVA4-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:0.1
occ:1.00
O G:HOH102 2.1 0.1 1.0
O A:HOH402 2.1 0.1 1.0
O G:HOH103 2.1 0.1 1.0
CE A:LYS202 2.5 0.3 1.0
O G:HOH104 2.6 0.1 1.0
NZ A:LYS202 2.7 0.3 1.0
OP2 G:A10 3.5 0.3 1.0
CD A:LYS202 3.9 0.3 1.0
O4 G:U5 4.3 96.1 1.0
CG A:LYS202 4.4 0.3 1.0
OP2 G:U9 4.5 93.1 1.0
O G:HOH101 4.5 0.1 1.0
OP2 G:A4 4.6 0.5 1.0
OP1 G:A4 4.9 0.5 1.0
P G:A10 5.0 0.3 1.0

Magnesium binding site 2 out of 2 in 6omv

Go back to Magnesium Binding Sites List in 6omv
Magnesium binding site 2 out of 2 in the Cryoem Structure of the LBCAS12A-Crrna-ACRVA4-Dna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of the LBCAS12A-Crrna-ACRVA4-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1301

b:0.1
occ:1.00
O B:THR716 2.2 86.1 1.0
OP2 G:A19 2.7 92.3 1.0
C B:THR716 3.4 86.1 1.0
P G:A19 4.1 92.3 1.0
N B:THR716 4.2 86.1 1.0
CA B:PRO717 4.2 83.7 1.0
OD1 B:ASN718 4.2 87.0 1.0
C B:PRO717 4.2 83.7 1.0
N B:PRO717 4.3 83.7 1.0
CA B:THR716 4.3 86.1 1.0
OP2 G:U18 4.3 98.6 1.0
O5' G:A19 4.4 92.3 1.0
OD1 B:ASP708 4.4 96.6 1.0
O B:PRO717 4.5 83.7 1.0
N B:ASN718 4.6 87.0 1.0
C3' G:U18 4.7 98.6 1.0
CB B:THR716 4.7 86.1 1.0
C B:GLY715 4.8 0.4 1.0
O3' G:U18 4.9 98.6 1.0
P G:U18 4.9 98.6 1.0
O5' G:U18 4.9 98.6 1.0
OP1 G:U18 5.0 98.6 1.0
N7 G:A19 5.0 92.3 1.0
C6 G:U18 5.0 98.6 1.0
OD2 B:ASP708 5.0 96.6 1.0

Reference:

H.Zhang, Z.Li, C.M.Daczkowski, C.Gabel, A.D.Mesecar, L.Chang. Structural Basis For the Inhibition of Crispr-CAS12A By Anti-Crispr Proteins. Cell Host Microbe V. 25 815 2019.
ISSN: ESSN 1934-6069
PubMed: 31155345
DOI: 10.1016/J.CHOM.2019.05.004
Page generated: Mon Dec 14 23:43:58 2020

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