Magnesium in PDB 6on2: Lon Protease From Yersinia Pestis with Y2853 Substrate

Enzymatic activity of Lon Protease From Yersinia Pestis with Y2853 Substrate

All present enzymatic activity of Lon Protease From Yersinia Pestis with Y2853 Substrate:
3.4.21.53;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Lon Protease From Yersinia Pestis with Y2853 Substrate (pdb code 6on2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Lon Protease From Yersinia Pestis with Y2853 Substrate, PDB code: 6on2:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 6on2

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Magnesium binding site 1 out of 5 in the Lon Protease From Yersinia Pestis with Y2853 Substrate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lon Protease From Yersinia Pestis with Y2853 Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:31.3
occ:1.00
OG1 A:THR363 2.1 44.7 1.0
O3G A:ATP801 2.1 31.4 1.0
O2B A:ATP801 2.3 31.4 1.0
CB A:THR363 3.1 44.7 1.0
PG A:ATP801 3.4 31.4 1.0
PB A:ATP801 3.5 31.4 1.0
O3B A:ATP801 3.7 31.4 1.0
CG2 A:THR363 3.7 44.7 1.0
NH2 B:ARG484 3.7 48.6 1.0
O1G A:ATP801 4.0 31.4 1.0
OD1 A:ASP423 4.0 54.8 1.0
O1A A:ATP801 4.2 31.4 1.0
CA A:THR363 4.3 44.7 1.0
O3A A:ATP801 4.4 31.4 1.0
N A:THR363 4.5 44.7 1.0
PA A:ATP801 4.6 31.4 1.0
O2A A:ATP801 4.6 31.4 1.0
O2G A:ATP801 4.6 31.4 1.0
O1B A:ATP801 4.7 31.4 1.0
OD2 B:ASP445 4.8 52.9 1.0
CG A:ASP423 4.8 54.8 1.0
OD2 A:ASP423 4.8 54.8 1.0
CZ B:ARG484 4.9 48.6 1.0
NE2 A:GLN424 5.0 58.0 1.0

Magnesium binding site 2 out of 5 in 6on2

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Magnesium binding site 2 out of 5 in the Lon Protease From Yersinia Pestis with Y2853 Substrate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lon Protease From Yersinia Pestis with Y2853 Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg802

b:24.0
occ:1.00
O2G B:ATP801 2.1 24.1 1.0
OG1 B:THR363 2.1 40.2 1.0
O2B B:ATP801 2.5 24.1 1.0
CB B:THR363 3.0 40.2 1.0
PG B:ATP801 3.4 24.1 1.0
NH2 C:ARG484 3.5 44.6 1.0
PB B:ATP801 3.7 24.1 1.0
CG2 B:THR363 3.8 40.2 1.0
O3B B:ATP801 3.8 24.1 1.0
O1A B:ATP801 3.8 24.1 1.0
O1G B:ATP801 4.0 24.1 1.0
NH1 C:ARG484 4.1 44.6 1.0
CA B:THR363 4.2 40.2 1.0
NE2 B:GLN424 4.2 50.3 1.0
N B:THR363 4.2 40.2 1.0
OD2 C:ASP445 4.3 47.7 1.0
CZ C:ARG484 4.3 44.6 1.0
O3A B:ATP801 4.5 24.1 1.0
O3G B:ATP801 4.6 24.1 1.0
PA B:ATP801 4.6 24.1 1.0
OD1 B:ASP423 4.6 48.9 1.0
CG B:ASP423 4.9 48.9 1.0
O2A B:ATP801 4.9 24.1 1.0
O1B B:ATP801 4.9 24.1 1.0

Magnesium binding site 3 out of 5 in 6on2

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Magnesium binding site 3 out of 5 in the Lon Protease From Yersinia Pestis with Y2853 Substrate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Lon Protease From Yersinia Pestis with Y2853 Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg802

b:32.3
occ:1.00
O3B C:ATP801 2.2 32.9 1.0
O2G C:ATP801 2.3 32.9 1.0
OG1 C:THR363 2.3 41.5 1.0
PG C:ATP801 2.6 32.9 1.0
O1G C:ATP801 2.9 32.9 1.0
CB C:THR363 3.3 41.5 1.0
PB C:ATP801 3.5 32.9 1.0
NH2 D:ARG484 3.6 49.5 1.0
O3A C:ATP801 3.7 32.9 1.0
O2A C:ATP801 3.9 32.9 1.0
OD2 D:ASP445 3.9 51.0 1.0
O3G C:ATP801 4.0 32.9 1.0
O2B C:ATP801 4.1 32.9 1.0
CG2 C:THR363 4.1 41.5 1.0
NE2 C:GLN424 4.2 50.4 1.0
PA C:ATP801 4.4 32.9 1.0
CA C:THR363 4.5 41.5 1.0
N C:THR363 4.5 41.5 1.0
O1B C:ATP801 4.7 32.9 1.0
NH2 C:ARG542 4.7 42.4 1.0
CZ D:ARG484 4.9 49.5 1.0
O1A C:ATP801 5.0 32.9 1.0

Magnesium binding site 4 out of 5 in 6on2

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Magnesium binding site 4 out of 5 in the Lon Protease From Yersinia Pestis with Y2853 Substrate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Lon Protease From Yersinia Pestis with Y2853 Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg802

b:36.5
occ:1.00
O2G D:ATP801 2.1 36.5 1.0
O1B D:ATP801 2.6 36.5 1.0
OG1 D:THR363 2.7 43.7 1.0
OD1 D:ASP423 3.3 50.2 1.0
PG D:ATP801 3.5 36.5 1.0
OD2 D:ASP423 3.8 50.2 1.0
PB D:ATP801 3.8 36.5 1.0
O3B D:ATP801 3.8 36.5 1.0
CB D:THR363 3.9 43.7 1.0
CG D:ASP423 3.9 50.2 1.0
NH2 D:ARG542 4.0 50.0 1.0
O1G D:ATP801 4.4 36.5 1.0
OD2 E:ASP483 4.4 79.7 1.0
O1A D:ATP801 4.5 36.5 1.0
O3G D:ATP801 4.5 36.5 1.0
NE2 D:GLN424 4.6 51.1 1.0
CG2 D:THR363 4.7 43.7 1.0
O3A D:ATP801 4.8 36.5 1.0
O2B D:ATP801 4.9 36.5 1.0
N D:THR363 4.9 43.7 1.0
OG1 D:THR471 4.9 47.0 1.0
CA D:THR363 5.0 43.7 1.0

Magnesium binding site 5 out of 5 in 6on2

Go back to Magnesium Binding Sites List in 6on2
Magnesium binding site 5 out of 5 in the Lon Protease From Yersinia Pestis with Y2853 Substrate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Lon Protease From Yersinia Pestis with Y2853 Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg802

b:43.6
occ:1.00
OG1 E:THR363 2.2 65.9 1.0
O2B E:ADP801 2.5 52.9 1.0
OD1 E:ASP423 2.6 74.6 1.0
CG E:ASP423 3.3 74.6 1.0
OD2 E:ASP423 3.4 74.6 1.0
O2A E:ADP801 3.4 52.9 1.0
CB E:THR363 3.5 65.9 1.0
PB E:ADP801 3.7 52.9 1.0
O1B E:ADP801 4.0 52.9 1.0
CG2 E:THR363 4.3 65.9 1.0
PA E:ADP801 4.3 52.9 1.0
O3A E:ADP801 4.4 52.9 1.0
N E:THR363 4.4 65.9 1.0
CA E:THR363 4.5 65.9 1.0
OE1 E:GLN424 4.6 75.3 1.0
OG1 E:THR471 4.7 71.1 1.0
CB E:ASP423 4.7 74.6 1.0
NH1 E:ARG379 4.7 68.7 1.0
O1A E:ADP801 4.8 52.9 1.0
O3B E:ADP801 5.0 52.9 1.0

Reference:

M.Shin, A.Asmita, C.Puchades, E.Adjei, R.L.Wiseman, A.W.Karzai, G.C.Lander. Distinct Structural Features of the Lon Protease Drive Conserved Hand-Over-Hand Substrate Translocation To Be Published.
Page generated: Mon Dec 14 23:44:01 2020

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