Magnesium in PDB 6oqa: Crystal Structure of CEP250 Bound to FKBP12 in the Presence of FK506- Like Novel Natural Product

Enzymatic activity of Crystal Structure of CEP250 Bound to FKBP12 in the Presence of FK506- Like Novel Natural Product

All present enzymatic activity of Crystal Structure of CEP250 Bound to FKBP12 in the Presence of FK506- Like Novel Natural Product:
5.2.1.8;

Protein crystallography data

The structure of Crystal Structure of CEP250 Bound to FKBP12 in the Presence of FK506- Like Novel Natural Product, PDB code: 6oqa was solved by S.-J.Lee, U.K.Shigdel, S.A.Townson, G.L.Verdine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	136.05 / 2.20
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	60.832, 64.952, 136.055, 90.00, 90.46, 90.00
*R / R_free (%)*	20.8 / 25.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of CEP250 Bound to FKBP12 in the Presence of FK506- Like Novel Natural Product (pdb code 6oqa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of CEP250 Bound to FKBP12 in the Presence of FK506- Like Novel Natural Product, PDB code: 6oqa:

Magnesium binding site 1 out of 1 in 6oqa

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Magnesium Binding Sites List in 6oqa

Magnesium binding site 1 out of 1 in the Crystal Structure of CEP250 Bound to FKBP12 in the Presence of FK506- Like Novel Natural Product

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of CEP250 Bound to FKBP12 in the Presence of FK506- Like Novel Natural Product within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
D:Mg2301 b:34.6 occ:1.00	OE1	D:GLN2212	2.3	32.1	1.0
	OE1	D:GLN2209	2.3	43.0	1.0
	O	D:HOH2413	2.4	41.0	1.0
	O3	D:PGE2306	2.6	38.8	1.0
	O4	D:PGE2306	2.7	45.3	1.0
	CD	D:GLN2212	3.3	35.7	1.0
	CD	D:GLN2209	3.3	40.6	1.0
	C5	D:PGE2306	3.4	43.4	1.0
	C6	D:PGE2306	3.6	41.3	1.0
	C4	D:PGE2306	3.6	42.0	1.0
	NZ	A:LYS53	3.7	35.1	1.0
	CB	D:GLN2212	3.7	38.4	1.0
	C3	D:PGE2306	3.8	33.5	1.0
	NE2	D:GLN2209	3.8	43.3	1.0
	CG	D:GLN2212	4.1	34.1	1.0
	NE2	D:GLN2212	4.2	32.1	1.0
	CG	D:GLN2209	4.5	45.6	1.0
	CA	D:GLN2209	4.5	37.5	1.0
	O	D:GLN2209	4.7	36.8	1.0
	O2	D:PGE2306	4.7	34.5	1.0
	CE	A:LYS53	4.8	35.7	1.0
	C1	D:EDO2303	4.9	66.7	1.0

Reference:

S.-J.Lee, S.-J.Lee, U.K.Shigdel, S.A.Townson, G.L.Verdine. N/A N/A.

Page generated: Tue Oct 1 13:31:49 2024

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