Magnesium in PDB 6oqr: E. Coli Atp Synthase Adp State 1A

All present enzymatic activity of E. Coli Atp Synthase Adp State 1A:
7.1.2.2;

The binding sites of Magnesium atom in the E. Coli Atp Synthase Adp State 1A (pdb code 6oqr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the E. Coli Atp Synthase Adp State 1A, PDB code: 6oqr:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the E. Coli Atp Synthase Adp State 1A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E. Coli Atp Synthase Adp State 1A within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:72.8 occ:1.00 O2G C:ATP600 1.8 71.9 1.0 OG1 C:THR176 1.9 69.0 1.0 O2B C:ATP600 1.9 71.9 1.0 CB C:THR176 3.1 69.0 1.0 PG C:ATP600 3.1 71.9 1.0 PB C:ATP600 3.1 71.9 1.0 O3B C:ATP600 3.4 71.9 1.0 O3G C:ATP600 3.7 71.9 1.0 O1B C:ATP600 3.9 71.9 1.0 CG2 C:THR176 4.0 69.0 1.0 N C:THR176 4.0 69.0 1.0 O2A C:ATP600 4.1 71.9 1.0 CA C:THR176 4.1 69.0 1.0 O1G C:ATP600 4.3 71.9 1.0 O3A C:ATP600 4.3 71.9 1.0 OD1 C:ASP261 4.5 67.5 1.0 PA C:ATP600 4.6 71.9 1.0 O1A C:ATP600 4.8 71.9 1.0 OD2 C:ASP261 4.9 67.5 1.0 NE2 C:GLN200 5.0 70.8 1.0

Magnesium binding site 2 out of 5 in the E. Coli Atp Synthase Adp State 1A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of E. Coli Atp Synthase Adp State 1A within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:74.8 occ:1.00 O2G B:ATP600 1.9 76.9 1.0 OG1 B:THR176 2.1 73.3 1.0 O2B B:ATP600 2.2 76.9 1.0 PG B:ATP600 3.0 76.9 1.0 PB B:ATP600 3.3 76.9 1.0 O3G B:ATP600 3.3 76.9 1.0 CB B:THR176 3.4 73.3 1.0 O3B B:ATP600 3.6 76.9 1.0 O1B B:ATP600 3.8 76.9 1.0 NE2 B:GLN200 4.0 71.8 1.0 N B:THR176 4.2 73.3 1.0 CG2 B:THR176 4.3 73.3 1.0 O1G B:ATP600 4.4 76.9 1.0 CA B:THR176 4.4 73.3 1.0 OD2 B:ASP261 4.4 67.8 1.0 OD1 B:ASP261 4.5 67.8 1.0 O3A B:ATP600 4.6 76.9 1.0 O1A B:ATP600 4.7 76.9 1.0 CG B:ASP261 4.9 67.8 1.0 OD1 B:ASP262 4.9 70.6 1.0 CD B:GLN200 5.0 71.8 1.0

Magnesium binding site 3 out of 5 in the E. Coli Atp Synthase Adp State 1A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of E. Coli Atp Synthase Adp State 1A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:87.5 occ:1.00 O2B A:ATP600 1.8 86.3 1.0 O2G A:ATP600 1.9 86.3 1.0 O1G A:ATP600 2.0 86.3 1.0 PG A:ATP600 2.3 86.3 1.0 OG1 A:THR176 2.4 79.3 1.0 PB A:ATP600 2.6 86.3 1.0 O3B A:ATP600 2.8 86.3 1.0 O1B A:ATP600 3.2 86.3 1.0 CB A:THR176 3.6 79.3 1.0 O3G A:ATP600 3.7 86.3 1.0 O3A A:ATP600 4.0 86.3 1.0 O2A A:ATP600 4.0 86.3 1.0 N A:THR176 4.2 79.3 1.0 PA A:ATP600 4.5 86.3 1.0 CA A:THR176 4.5 79.3 1.0 NZ A:LYS175 4.6 81.1 1.0 CG2 A:THR176 4.6 79.3 1.0 O1A A:ATP600 4.8 86.3 1.0 OE1 A:GLN200 4.9 78.3 1.0 CE A:LYS175 5.0 81.1 1.0

Magnesium binding site 4 out of 5 in the E. Coli Atp Synthase Adp State 1A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of E. Coli Atp Synthase Adp State 1A within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg501 b:67.5 occ:1.00 OG1 F:THR156 2.2 71.5 1.0 O1B F:ADP500 2.4 72.4 1.0 OE1 F:GLU181 2.8 71.7 1.0 CB F:THR156 3.4 71.5 1.0 OE1 F:GLU185 3.5 74.4 1.0 NH1 F:ARG182 3.6 70.2 1.0 PB F:ADP500 3.6 72.4 1.0 CD F:GLU181 3.7 71.7 1.0 CG2 F:THR156 3.8 71.5 1.0 O2B F:ADP500 4.1 72.4 1.0 O3B F:ADP500 4.2 72.4 1.0 O1A F:ADP500 4.2 72.4 1.0 CD F:GLU185 4.3 74.4 1.0 OE2 F:GLU181 4.4 71.7 1.0 OE2 F:GLU185 4.4 74.4 1.0 OD1 F:ASP242 4.4 73.1 1.0 CG F:GLU181 4.6 71.7 1.0 CA F:THR156 4.7 71.5 1.0 O3A F:ADP500 4.8 72.4 1.0 CZ F:ARG182 4.8 70.2 1.0 OD2 F:ASP242 4.8 73.1 1.0 N F:THR156 4.9 71.5 1.0

Magnesium binding site 5 out of 5 in the E. Coli Atp Synthase Adp State 1A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of E. Coli Atp Synthase Adp State 1A within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:77.8 occ:1.00 O3 D:PO4501 1.9 79.7 1.0 OG1 D:THR156 1.9 79.0 1.0 O2B D:ADP500 2.4 80.0 1.0 P D:PO4501 3.3 79.7 1.0 CB D:THR156 3.3 79.0 1.0 PB D:ADP500 3.7 80.0 1.0 OE1 D:GLU185 3.7 76.4 1.0 O2 D:PO4501 3.8 79.7 1.0 O1 D:PO4501 4.0 79.7 1.0 CG2 D:THR156 4.1 79.0 1.0 NH1 D:ARG182 4.2 74.7 1.0 N D:THR156 4.2 79.0 1.0 CA D:THR156 4.3 79.0 1.0 O4 D:PO4501 4.3 79.7 1.0 O3B D:ADP500 4.3 80.0 1.0 OD2 D:ASP242 4.3 80.7 1.0 O1A D:ADP500 4.4 80.0 1.0 O1B D:ADP500 4.4 80.0 1.0 OE2 D:GLU185 4.4 76.4 1.0 CD D:GLU185 4.5 76.4 1.0 OD1 D:ASP242 4.5 80.7 1.0 CG D:ASP242 4.8 80.7 1.0 O3A D:ADP500 4.8 80.0 1.0 NH2 D:ARG246 4.9 75.1 1.0 ND2 D:ASN243 4.9 76.9 1.0

C.Robinson, A.G.Stewart, R.Ishmukhametov, R.Berry, M.Sobti, D.Wu, J.Walshe, Y.Zeng. Cryo-Em Structures Provide Insight Into How E. Coli F1FO Atp Synthase Accommodates Symmetry Mismatch Nat Commun 2020.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-020-16387-2