Magnesium in PDB 6oqt: E. Coli Atp Synthase State 1C
Enzymatic activity of E. Coli Atp Synthase State 1C
All present enzymatic activity of E. Coli Atp Synthase State 1C:
7.1.2.2;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the E. Coli Atp Synthase State 1C
(pdb code 6oqt). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
E. Coli Atp Synthase State 1C, PDB code: 6oqt:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 6oqt
Go back to
Magnesium Binding Sites List in 6oqt
Magnesium binding site 1 out
of 5 in the E. Coli Atp Synthase State 1C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of E. Coli Atp Synthase State 1C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg601
b:55.9
occ:1.00
|
O2G
|
C:ATP600
|
1.8
|
59.7
|
1.0
|
OG1
|
C:THR176
|
1.9
|
57.5
|
1.0
|
O2B
|
C:ATP600
|
1.9
|
59.7
|
1.0
|
CB
|
C:THR176
|
3.1
|
57.5
|
1.0
|
PG
|
C:ATP600
|
3.2
|
59.7
|
1.0
|
PB
|
C:ATP600
|
3.2
|
59.7
|
1.0
|
O3B
|
C:ATP600
|
3.6
|
59.7
|
1.0
|
O1G
|
C:ATP600
|
3.9
|
59.7
|
1.0
|
O1B
|
C:ATP600
|
4.0
|
59.7
|
1.0
|
CG2
|
C:THR176
|
4.0
|
57.5
|
1.0
|
N
|
C:THR176
|
4.0
|
57.5
|
1.0
|
CA
|
C:THR176
|
4.2
|
57.5
|
1.0
|
O3G
|
C:ATP600
|
4.3
|
59.7
|
1.0
|
O2A
|
C:ATP600
|
4.3
|
59.7
|
1.0
|
OD1
|
C:ASP261
|
4.4
|
55.8
|
1.0
|
O3A
|
C:ATP600
|
4.4
|
59.7
|
1.0
|
PA
|
C:ATP600
|
4.7
|
59.7
|
1.0
|
O1A
|
C:ATP600
|
4.8
|
59.7
|
1.0
|
OD2
|
C:ASP261
|
4.9
|
55.8
|
1.0
|
NE2
|
C:GLN200
|
4.9
|
58.8
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 6oqt
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Magnesium Binding Sites List in 6oqt
Magnesium binding site 2 out
of 5 in the E. Coli Atp Synthase State 1C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of E. Coli Atp Synthase State 1C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:58.3
occ:1.00
|
O2G
|
B:ATP600
|
1.9
|
68.3
|
1.0
|
O2B
|
B:ATP600
|
2.0
|
68.3
|
1.0
|
OG1
|
B:THR176
|
2.1
|
64.2
|
1.0
|
PG
|
B:ATP600
|
3.1
|
68.3
|
1.0
|
PB
|
B:ATP600
|
3.2
|
68.3
|
1.0
|
CB
|
B:THR176
|
3.4
|
64.2
|
1.0
|
O3G
|
B:ATP600
|
3.5
|
68.3
|
1.0
|
O3B
|
B:ATP600
|
3.5
|
68.3
|
1.0
|
O1B
|
B:ATP600
|
3.9
|
68.3
|
1.0
|
N
|
B:THR176
|
4.1
|
64.2
|
1.0
|
NE2
|
B:GLN200
|
4.2
|
61.4
|
1.0
|
OD1
|
B:ASP261
|
4.3
|
57.6
|
1.0
|
CG2
|
B:THR176
|
4.3
|
64.2
|
1.0
|
CA
|
B:THR176
|
4.3
|
64.2
|
1.0
|
O1G
|
B:ATP600
|
4.4
|
68.3
|
1.0
|
OD2
|
B:ASP261
|
4.5
|
57.6
|
1.0
|
O3A
|
B:ATP600
|
4.5
|
68.3
|
1.0
|
O1A
|
B:ATP600
|
4.6
|
68.3
|
1.0
|
CG
|
B:ASP261
|
4.8
|
57.6
|
1.0
|
PA
|
B:ATP600
|
4.9
|
68.3
|
1.0
|
CE
|
B:LYS175
|
4.9
|
63.7
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 6oqt
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Magnesium Binding Sites List in 6oqt
Magnesium binding site 3 out
of 5 in the E. Coli Atp Synthase State 1C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of E. Coli Atp Synthase State 1C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg601
b:66.6
occ:1.00
|
O2B
|
A:ATP600
|
1.9
|
73.8
|
1.0
|
OG1
|
A:THR176
|
1.9
|
68.8
|
1.0
|
O2G
|
A:ATP600
|
2.0
|
73.8
|
1.0
|
PG
|
A:ATP600
|
3.0
|
73.8
|
1.0
|
PB
|
A:ATP600
|
3.0
|
73.8
|
1.0
|
CB
|
A:THR176
|
3.1
|
68.8
|
1.0
|
O1G
|
A:ATP600
|
3.2
|
73.8
|
1.0
|
O3B
|
A:ATP600
|
3.5
|
73.8
|
1.0
|
O1B
|
A:ATP600
|
3.8
|
73.8
|
1.0
|
CG2
|
A:THR176
|
4.0
|
68.8
|
1.0
|
O2A
|
A:ATP600
|
4.0
|
73.8
|
1.0
|
N
|
A:THR176
|
4.0
|
68.8
|
1.0
|
CA
|
A:THR176
|
4.1
|
68.8
|
1.0
|
O3A
|
A:ATP600
|
4.3
|
73.8
|
1.0
|
O3G
|
A:ATP600
|
4.3
|
73.8
|
1.0
|
OE1
|
A:GLN200
|
4.4
|
68.2
|
1.0
|
PA
|
A:ATP600
|
4.5
|
73.8
|
1.0
|
O1A
|
A:ATP600
|
4.7
|
73.8
|
1.0
|
OD2
|
A:ASP261
|
4.8
|
65.4
|
1.0
|
OD1
|
A:ASP261
|
4.9
|
65.4
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 6oqt
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Magnesium Binding Sites List in 6oqt
Magnesium binding site 4 out
of 5 in the E. Coli Atp Synthase State 1C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of E. Coli Atp Synthase State 1C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg501
b:59.7
occ:1.00
|
OG1
|
F:THR156
|
2.4
|
61.2
|
1.0
|
O1B
|
F:ADP500
|
2.5
|
63.1
|
1.0
|
PB
|
F:ADP500
|
3.3
|
63.1
|
1.0
|
O2B
|
F:ADP500
|
3.4
|
63.1
|
1.0
|
OE1
|
F:GLU181
|
3.5
|
61.1
|
1.0
|
NH1
|
F:ARG182
|
3.7
|
60.7
|
1.0
|
CB
|
F:THR156
|
3.8
|
61.2
|
1.0
|
O3B
|
F:ADP500
|
3.8
|
63.1
|
1.0
|
CD
|
F:GLU181
|
4.1
|
61.1
|
1.0
|
OE1
|
F:GLU185
|
4.3
|
63.3
|
1.0
|
CG2
|
F:THR156
|
4.5
|
61.2
|
1.0
|
OE2
|
F:GLU181
|
4.5
|
61.1
|
1.0
|
OE2
|
F:GLU185
|
4.5
|
63.3
|
1.0
|
O1A
|
F:ADP500
|
4.5
|
63.1
|
1.0
|
O3A
|
F:ADP500
|
4.7
|
63.1
|
1.0
|
NZ
|
F:LYS155
|
4.8
|
59.3
|
1.0
|
N
|
F:THR156
|
4.8
|
61.2
|
1.0
|
CA
|
F:THR156
|
4.8
|
61.2
|
1.0
|
CZ
|
F:ARG182
|
4.8
|
60.7
|
1.0
|
CD
|
F:GLU185
|
4.8
|
63.3
|
1.0
|
CE
|
F:LYS155
|
4.9
|
59.3
|
1.0
|
CG
|
F:GLU181
|
5.0
|
61.1
|
1.0
|
NH2
|
F:ARG182
|
5.0
|
60.7
|
1.0
|
ND2
|
F:ASN243
|
5.0
|
58.6
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 6oqt
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Magnesium Binding Sites List in 6oqt
Magnesium binding site 5 out
of 5 in the E. Coli Atp Synthase State 1C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of E. Coli Atp Synthase State 1C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg502
b:66.8
occ:1.00
|
O3
|
D:PO4501
|
1.9
|
69.8
|
1.0
|
OG1
|
D:THR156
|
2.2
|
69.6
|
1.0
|
O2B
|
D:ADP500
|
2.4
|
70.8
|
1.0
|
O2
|
D:PO4501
|
2.8
|
69.8
|
1.0
|
P
|
D:PO4501
|
2.8
|
69.8
|
1.0
|
PB
|
D:ADP500
|
3.5
|
70.8
|
1.0
|
CB
|
D:THR156
|
3.6
|
69.6
|
1.0
|
O1
|
D:PO4501
|
3.8
|
69.8
|
1.0
|
O3B
|
D:ADP500
|
3.9
|
70.8
|
1.0
|
O4
|
D:PO4501
|
4.0
|
69.8
|
1.0
|
O1B
|
D:ADP500
|
4.1
|
70.8
|
1.0
|
OE1
|
D:GLU185
|
4.1
|
67.4
|
1.0
|
N
|
D:THR156
|
4.2
|
69.6
|
1.0
|
NH1
|
D:ARG182
|
4.3
|
64.7
|
1.0
|
OD2
|
D:ASP242
|
4.4
|
70.3
|
1.0
|
CA
|
D:THR156
|
4.4
|
69.6
|
1.0
|
CG2
|
D:THR156
|
4.5
|
69.6
|
1.0
|
NZ
|
D:LYS155
|
4.6
|
69.1
|
1.0
|
ND2
|
D:ASN243
|
4.6
|
66.7
|
1.0
|
CB
|
D:LYS155
|
4.7
|
69.1
|
1.0
|
O1A
|
D:ADP500
|
4.7
|
70.8
|
1.0
|
OD1
|
D:ASP242
|
4.7
|
70.3
|
1.0
|
O3A
|
D:ADP500
|
4.8
|
70.8
|
1.0
|
O
|
D:ASP242
|
4.8
|
70.3
|
1.0
|
OE2
|
D:GLU185
|
4.8
|
67.4
|
1.0
|
CD
|
D:GLU185
|
4.9
|
67.4
|
1.0
|
NH2
|
D:ARG246
|
4.9
|
64.9
|
1.0
|
CG
|
D:ASP242
|
4.9
|
70.3
|
1.0
|
CE
|
D:LYS155
|
5.0
|
69.1
|
1.0
|
|
Reference:
C.Robinson,
A.G.Stewart,
R.Ishmukhametov,
R.Berry,
M.Sobti,
D.Wu,
J.Walshe,
Y.Zeng.
Cryo-Em Structures Provide Insight Into How E. Coli F1FO Atp Synthase Accommodates Symmetry Mismatch Nat Commun 2020.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-020-16387-2
Page generated: Tue Oct 1 13:32:25 2024
|