Atomistry » Magnesium » PDB 6ojf-6oqz » 6oqu
Atomistry »
  Magnesium »
    PDB 6ojf-6oqz »
      6oqu »

Magnesium in PDB 6oqu: E. Coli Atp Synthase State 1D

Enzymatic activity of E. Coli Atp Synthase State 1D

All present enzymatic activity of E. Coli Atp Synthase State 1D:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the E. Coli Atp Synthase State 1D (pdb code 6oqu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the E. Coli Atp Synthase State 1D, PDB code: 6oqu:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 6oqu

Go back to Magnesium Binding Sites List in 6oqu
Magnesium binding site 1 out of 5 in the E. Coli Atp Synthase State 1D


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E. Coli Atp Synthase State 1D within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:72.5
occ:1.00
O2G C:ATP600 1.7 71.1 1.0
OG1 C:THR176 1.8 67.9 1.0
O2B C:ATP600 2.1 71.1 1.0
CB C:THR176 3.1 67.9 1.0
PG C:ATP600 3.2 71.1 1.0
PB C:ATP600 3.3 71.1 1.0
O3B C:ATP600 3.7 71.1 1.0
CG2 C:THR176 3.9 67.9 1.0
OD1 C:ASP261 4.0 66.8 1.0
O1G C:ATP600 4.0 71.1 1.0
O1B C:ATP600 4.1 71.1 1.0
N C:THR176 4.1 67.9 1.0
CA C:THR176 4.2 67.9 1.0
O3G C:ATP600 4.2 71.1 1.0
O2A C:ATP600 4.4 71.1 1.0
O3A C:ATP600 4.6 71.1 1.0
OD2 C:ASP261 4.7 66.8 1.0
CG C:ASP261 4.7 66.8 1.0
PA C:ATP600 4.9 71.1 1.0
O1A C:ATP600 5.0 71.1 1.0

Magnesium binding site 2 out of 5 in 6oqu

Go back to Magnesium Binding Sites List in 6oqu
Magnesium binding site 2 out of 5 in the E. Coli Atp Synthase State 1D


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of E. Coli Atp Synthase State 1D within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:71.9
occ:1.00
O2G B:ATP600 1.8 77.6 1.0
OG1 B:THR176 1.9 73.0 1.0
O2B B:ATP600 2.0 77.6 1.0
CB B:THR176 3.2 73.0 1.0
PG B:ATP600 3.2 77.6 1.0
PB B:ATP600 3.2 77.6 1.0
O3B B:ATP600 3.5 77.6 1.0
O3G B:ATP600 3.9 77.6 1.0
CG2 B:THR176 4.0 73.0 1.0
OD2 B:ASP261 4.0 67.3 1.0
O1B B:ATP600 4.1 77.6 1.0
N B:THR176 4.1 73.0 1.0
NE2 B:GLN200 4.1 72.0 1.0
CA B:THR176 4.2 73.0 1.0
O1A B:ATP600 4.3 77.6 1.0
O1G B:ATP600 4.4 77.6 1.0
O3A B:ATP600 4.5 77.6 1.0
PA B:ATP600 4.7 77.6 1.0
OD1 B:ASP261 4.7 67.3 1.0
O2A B:ATP600 4.8 77.6 1.0
CG B:ASP261 4.8 67.3 1.0

Magnesium binding site 3 out of 5 in 6oqu

Go back to Magnesium Binding Sites List in 6oqu
Magnesium binding site 3 out of 5 in the E. Coli Atp Synthase State 1D


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of E. Coli Atp Synthase State 1D within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:83.9
occ:1.00
O2B A:ATP600 1.7 83.9 1.0
O1G A:ATP600 1.9 83.9 1.0
O2G A:ATP600 1.9 83.9 1.0
PG A:ATP600 2.1 83.9 1.0
PB A:ATP600 2.4 83.9 1.0
O3B A:ATP600 2.6 83.9 1.0
OG1 A:THR176 2.7 77.6 1.0
O1B A:ATP600 3.1 83.9 1.0
O3G A:ATP600 3.6 83.9 1.0
CB A:THR176 3.8 77.6 1.0
O2A A:ATP600 3.8 83.9 1.0
O3A A:ATP600 3.9 83.9 1.0
N A:THR176 4.4 77.6 1.0
PA A:ATP600 4.4 83.9 1.0
NZ A:LYS175 4.4 79.0 1.0
CA A:THR176 4.7 77.6 1.0
CE A:LYS175 4.8 79.0 1.0
CG2 A:THR176 4.9 77.6 1.0
NH2 D:ARG342 4.9 87.6 1.0
O1A A:ATP600 4.9 83.9 1.0

Magnesium binding site 4 out of 5 in 6oqu

Go back to Magnesium Binding Sites List in 6oqu
Magnesium binding site 4 out of 5 in the E. Coli Atp Synthase State 1D


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of E. Coli Atp Synthase State 1D within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg501

b:64.0
occ:1.00
OG1 F:THR156 1.8 70.2 1.0
O1B F:ADP500 2.0 72.1 1.0
CB F:THR156 3.2 70.2 1.0
PB F:ADP500 3.2 72.1 1.0
O2B F:ADP500 3.5 72.1 1.0
O1A F:ADP500 3.6 72.1 1.0
CG2 F:THR156 3.9 70.2 1.0
OE1 F:GLU185 3.9 72.7 1.0
NH1 F:ARG182 4.0 70.0 1.0
OE1 F:GLU181 4.0 71.3 1.0
O3B F:ADP500 4.2 72.1 1.0
CA F:THR156 4.2 70.2 1.0
N F:THR156 4.3 70.2 1.0
O3A F:ADP500 4.3 72.1 1.0
CD F:GLU181 4.4 71.3 1.0
PA F:ADP500 4.5 72.1 1.0
NH1 B:ARG376 4.7 74.0 1.0
OE2 F:GLU185 4.7 72.7 1.0
OD1 F:ASP242 4.7 72.4 1.0
CD F:GLU185 4.8 72.7 1.0
OE2 F:GLU181 4.8 71.3 1.0
CG F:LYS155 4.9 67.8 1.0
NZ F:LYS155 5.0 67.8 1.0

Magnesium binding site 5 out of 5 in 6oqu

Go back to Magnesium Binding Sites List in 6oqu
Magnesium binding site 5 out of 5 in the E. Coli Atp Synthase State 1D


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of E. Coli Atp Synthase State 1D within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg502

b:73.5
occ:1.00
OG1 D:THR156 2.0 76.7 1.0
O3 D:PO4501 2.1 79.1 1.0
O2B D:ADP500 2.3 78.5 1.0
P D:PO4501 3.2 79.1 1.0
O2 D:PO4501 3.2 79.1 1.0
CB D:THR156 3.4 76.7 1.0
PB D:ADP500 3.5 78.5 1.0
OE1 D:GLU185 3.8 75.2 1.0
O1 D:PO4501 4.1 79.1 1.0
OE2 D:GLU185 4.1 75.2 1.0
O3B D:ADP500 4.1 78.5 1.0
CG2 D:THR156 4.1 76.7 1.0
O1B D:ADP500 4.1 78.5 1.0
N D:THR156 4.3 76.7 1.0
CA D:THR156 4.3 76.7 1.0
O4 D:PO4501 4.3 79.1 1.0
CD D:GLU185 4.3 75.2 1.0
NH1 D:ARG182 4.4 73.7 1.0
OD2 D:ASP242 4.4 77.9 1.0
O1A D:ADP500 4.6 78.5 1.0
OD1 D:ASP242 4.7 77.9 1.0
O3A D:ADP500 4.8 78.5 1.0
ND2 D:ASN243 4.9 74.0 1.0
CB D:LYS155 4.9 76.5 1.0
CG D:ASP242 5.0 77.9 1.0
NZ D:LYS155 5.0 76.5 1.0

Reference:

C.Robinson, A.G.Stewart, R.Ishmukhametov, R.Berry, M.Sobti, D.Wu, J.Walshe, Y.Zeng. Cryo-Em Structures Provide Insight Into How E. Coli F1FO Atp Synthase Accommodates Symmetry Mismatch Nat Commun 2020.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-020-16387-2
Page generated: Tue Oct 1 13:32:24 2024

Last articles

As in 2DYB
As in 2D28
As in 2BVT
As in 2BVY
As in 2BOX
As in 2BOU
As in 2BOC
As in 2BOQ
As in 1Z6B
As in 2A2T
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy