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Magnesium in PDB 6oqz: Crystal Structure of Glucose Isomerase From Non-Merohedrally Twinned Crystals

Enzymatic activity of Crystal Structure of Glucose Isomerase From Non-Merohedrally Twinned Crystals

All present enzymatic activity of Crystal Structure of Glucose Isomerase From Non-Merohedrally Twinned Crystals:
5.3.1.5;

Protein crystallography data

The structure of Crystal Structure of Glucose Isomerase From Non-Merohedrally Twinned Crystals, PDB code: 6oqz was solved by M.Sevvana, M.Ruf, I.Uson, G.M.Sheldrick, R.Herbst-Irmer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.88 / 1.60
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.931, 97.935, 102.706, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 6oqz:

The structure of Crystal Structure of Glucose Isomerase From Non-Merohedrally Twinned Crystals also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Glucose Isomerase From Non-Merohedrally Twinned Crystals (pdb code 6oqz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Glucose Isomerase From Non-Merohedrally Twinned Crystals, PDB code: 6oqz:

Magnesium binding site 1 out of 1 in 6oqz

Go back to Magnesium Binding Sites List in 6oqz
Magnesium binding site 1 out of 1 in the Crystal Structure of Glucose Isomerase From Non-Merohedrally Twinned Crystals


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glucose Isomerase From Non-Merohedrally Twinned Crystals within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:9.5
occ:0.61
 MN A:MN402 0.0 9.5 0.4
OD2 A:ASP287 1.9 15.8 1.0
OE2 A:GLU181 2.0 15.2 1.0
OE1 A:GLU217 2.0 12.5 1.0
O A:HOH504 2.3 27.1 1.0
OD2 A:ASP245 2.3 14.9 1.0
CG A:ASP287 2.9 14.7 1.0
CD A:GLU181 3.0 15.1 1.0
CD A:GLU217 3.1 9.2 1.0
CG A:ASP245 3.2 20.3 1.0
CB A:ASP287 3.2 11.5 1.0
OE1 A:GLU181 3.3 16.9 1.0
CM A:MPD404 3.4 30.7 1.0
CB A:ASP245 3.8 16.5 1.0
CG A:GLU217 3.8 6.3 1.0
O A:HOH636 3.9 13.3 1.0
CB A:GLU217 4.0 8.5 1.0
OD1 A:ASP287 4.0 13.6 1.0
OD1 A:ASP245 4.0 32.5 1.0
C3 A:MPD404 4.1 21.8 1.0
O2 A:MPD404 4.1 31.1 1.0
C2 A:MPD404 4.1 29.2 1.0
OE2 A:GLU217 4.1 12.4 1.0
CG A:GLU181 4.3 12.7 1.0
CE1 A:HIS220 4.3 12.5 1.0
C4 A:MPD404 4.7 27.4 1.0
CA A:ASP287 4.8 7.9 1.0
NE2 A:HIS220 4.9 12.1 1.0
ND1 A:HIS220 5.0 10.0 1.0
MN A:MN401 5.0 12.6 1.0
ND2 A:ASN215 5.0 11.6 1.0

Reference:

M.Sevvana, M.Ruf, I.Uson, G.M.Sheldrick, R.Herbst-Irmer. Non-Merohedral Twinning: From Minerals to Proteins. Acta Crystallogr D Struct V. 75 1040 2019BIOL.
ISSN: ISSN 2059-7983
PubMed: 31793898
DOI: 10.1107/S2059798319010179
Page generated: Tue Oct 1 13:40:51 2024

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