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Magnesium in PDB 6ote: Crystal Structure of Seryl-Trna Synthetase (Serrs) From Cryptosporidium Parvum Complexed with L-Serylsulfamoyl Adenosine

Protein crystallography data

The structure of Crystal Structure of Seryl-Trna Synthetase (Serrs) From Cryptosporidium Parvum Complexed with L-Serylsulfamoyl Adenosine, PDB code: 6ote was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.92 / 2.95
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.210, 92.210, 257.180, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 25.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Seryl-Trna Synthetase (Serrs) From Cryptosporidium Parvum Complexed with L-Serylsulfamoyl Adenosine (pdb code 6ote). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Seryl-Trna Synthetase (Serrs) From Cryptosporidium Parvum Complexed with L-Serylsulfamoyl Adenosine, PDB code: 6ote:

Magnesium binding site 1 out of 1 in 6ote

Go back to Magnesium Binding Sites List in 6ote
Magnesium binding site 1 out of 1 in the Crystal Structure of Seryl-Trna Synthetase (Serrs) From Cryptosporidium Parvum Complexed with L-Serylsulfamoyl Adenosine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Seryl-Trna Synthetase (Serrs) From Cryptosporidium Parvum Complexed with L-Serylsulfamoyl Adenosine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:85.8
occ:1.00
OG A:SER371 2.2 64.0 1.0
O A:HOH602 2.5 68.2 1.0
O2S A:SSA501 2.8 51.5 1.0
OE1 A:GLU368 2.9 66.8 1.0
NZ A:LYS353 3.2 65.9 1.0
CD A:GLU368 3.3 68.5 1.0
CB A:SER371 3.4 58.5 1.0
OE2 A:GLU368 3.4 72.4 1.0
O A:HOH610 3.9 44.1 1.0
OD1 A:ASP355 3.9 71.8 1.0
CE A:LYS353 4.0 61.3 1.0
S1 A:SSA501 4.1 46.4 1.0
OD2 A:ASP355 4.2 72.1 1.0
CG A:GLU368 4.5 62.9 1.0
CG A:ASP355 4.5 70.0 1.0
CD A:LYS353 4.6 56.0 1.0
CA A:SER371 4.6 58.1 1.0
N8 A:SSA501 4.8 40.0 1.0
O3' A:SSA501 4.9 53.2 1.0
O1S A:SSA501 4.9 54.1 1.0

Reference:

D.M.Dranow, J.Abendroth, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Seryl-Trna Synthetase (Serrs) From Cryptosporidium Parvum Complexed with L-Serylsulfamoyl Adenosine To Be Published.
Page generated: Tue Oct 1 13:40:51 2024

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