Magnesium in PDB 6ovf: Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03

The structure of Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03, PDB code: 6ovf was solved by M.Chavez, D.R.Madden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.85 / 1.95
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.644, 102.644, 80.202, 90.00, 90.00, 120.00
R / Rfree (%)	17.5 / 20.7

The structure of Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03 also contains other interesting chemical elements:

Nickel

(Ni)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03 (pdb code 6ovf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03, PDB code: 6ovf:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:37.4 occ:1.00 O A:HOH406 2.0 38.8 0.3 O A:HOH385 2.1 45.3 0.5 OD2 A:ASP59 2.2 44.8 1.0 CG A:ASP59 3.2 35.2 1.0 OD1 A:ASP59 3.5 28.1 1.0 O A:HOH405 3.9 50.8 1.0 O A:HOH320 4.1 39.2 1.0 O A:HOH377 4.3 35.5 1.0 CB A:ASP59 4.5 29.3 1.0 O A:HOH390 4.6 36.5 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg201 b:26.5 occ:1.00 OE1 B:GLU141 1.8 60.5 1.0 O B:HOH375 1.8 37.7 1.0 O B:HOH305 1.9 51.5 1.0 O B:HOH301 2.1 44.4 1.0 NE2 B:HIS144 2.3 31.5 1.0 O B:HOH304 2.3 61.3 1.0 CD B:GLU141 2.5 62.9 1.0 OE2 B:GLU141 2.5 73.7 1.0 CD2 B:HIS144 3.1 29.2 1.0 CE1 B:HIS144 3.3 28.6 1.0 N B:GLY142 3.8 60.1 1.0 CG B:GLU141 3.9 61.6 1.0 CA B:GLU141 4.3 47.7 1.0 CG B:HIS144 4.3 28.6 1.0 ND1 B:HIS144 4.4 29.5 1.0 O B:PRO61 4.4 30.6 1.0 CB B:GLU141 4.5 55.5 1.0 C B:GLU141 4.6 50.4 1.0 CA B:GLY142 4.7 55.9 1.0 CA B:ASP62 4.8 26.2 1.0 OD1 B:ASP62 5.0 46.4 1.0 N B:ALA63 5.0 22.5 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:13.4 occ:0.33 O B:HOH359 1.8 58.1 0.3 O B:HOH353 2.0 42.2 0.3 NE2 B:HIS89 2.3 60.8 0.8 CE1 B:HIS89 3.1 70.3 0.8 CD2 B:HIS89 3.3 67.0 0.8 O B:HOH344 3.3 71.2 1.0 ND1 B:HIS89 4.3 71.5 0.8 CG B:HIS89 4.4 65.9 0.8 O B:GLY87 4.5 78.6 1.0

M.Chavez, D.R.Madden. Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03 To Be Published.