Magnesium in PDB 6ovy: X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C

Enzymatic activity of X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C

All present enzymatic activity of X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C:
2.7.7.6;

Protein crystallography data

The structure of X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C, PDB code: 6ovy was solved by Y.Shin, K.S.Murakami, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.66 / 3.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 184.830, 102.479, 295.596, 90.00, 98.80, 90.00
R / Rfree (%) 21.3 / 23.7

Other elements in 6ovy:

The structure of X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C (pdb code 6ovy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C, PDB code: 6ovy:

Magnesium binding site 1 out of 1 in 6ovy

Go back to Magnesium Binding Sites List in 6ovy
Magnesium binding site 1 out of 1 in the X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Crystal Structure of A Bacterial Reiterative Transcription Complex of Pyrg Promoter Variant -1C within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1602

b:59.5
occ:1.00
OD1 D:ASP739 1.9 64.6 1.0
O3' I:G5 2.3 66.7 1.0
OD1 D:ASP743 2.4 48.9 1.0
OD1 D:ASP741 2.5 54.4 1.0
OD2 D:ASP741 2.7 68.6 1.0
CG D:ASP739 2.9 64.0 1.0
CG D:ASP741 2.9 60.8 1.0
OD2 D:ASP743 3.1 47.0 1.0
CG D:ASP743 3.1 49.7 1.0
OD2 D:ASP739 3.3 66.6 1.0
C3' I:G5 3.6 55.2 1.0
O2' I:G5 3.8 52.8 1.0
N D:ASP739 4.1 49.6 1.0
CB D:ASP739 4.2 55.1 1.0
C2' I:G5 4.2 54.3 1.0
C4' I:G5 4.2 53.7 1.0
CB D:ASP741 4.5 52.6 1.0
CA D:ASP739 4.5 47.5 1.0
C D:ASP739 4.7 49.9 1.0
CB D:ASP743 4.7 39.7 1.0
NH2 D:ARG704 4.7 46.0 1.0
N D:ASP741 4.8 55.1 1.0
C5' I:G5 4.9 51.2 1.0
O D:ASP739 4.9 48.5 1.0
O6 D:POP1601 5.0 0.2 1.0

Reference:

K.S.Murakami, Y.Shin. Structural Basis of Reiterative Transcription From the Pyrg Promoter To Be Published.
Page generated: Mon Dec 14 23:44:59 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy