Magnesium in PDB 6p04: Binary Structure of the E52D Mutant of Ant-4'' with Neomycin

The structure of Binary Structure of the E52D Mutant of Ant-4'' with Neomycin, PDB code: 6p04 was solved by B.Selvaraj, M.J.Cuneo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.23 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	58.700, 98.450, 101.820, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 23.6

The binding sites of Magnesium atom in the Binary Structure of the E52D Mutant of Ant-4'' with Neomycin (pdb code 6p04). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Binary Structure of the E52D Mutant of Ant-4'' with Neomycin, PDB code: 6p04:

Magnesium binding site 1 out of 1 in the Binary Structure of the E52D Mutant of Ant-4'' with Neomycin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Binary Structure of the E52D Mutant of Ant-4'' with Neomycin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:45.5 occ:1.00 O4 A:NMY301 2.5 55.5 1.0 OE2 B:GLU76 2.6 40.8 1.0 O A:HOH405 2.7 26.8 1.0 OE2 A:GLU145 2.9 49.2 1.0 C3 A:NMY301 3.1 60.6 1.0 C4 A:NMY301 3.1 64.4 1.0 OD1 B:ASP52 3.1 37.2 1.0 NZ B:LYS74 3.3 41.9 1.0 C5 A:NMY301 3.5 66.5 1.0 OD2 B:ASP50 3.6 42.8 1.0 O B:HOH418 3.6 23.9 1.0 O3 A:NMY301 3.7 55.4 1.0 CD B:GLU76 3.7 44.3 1.0 OD2 B:ASP52 3.8 32.6 1.0 CD A:GLU145 3.8 47.7 1.0 CG B:ASP52 3.8 35.8 1.0 OE1 B:GLU67 3.8 40.4 1.0 OE1 A:GLU145 4.0 58.5 1.0 N9 A:NMY301 4.1 62.9 1.0 CB B:GLU76 4.1 23.3 1.0 C6 A:NMY301 4.3 56.8 1.0 C2 A:NMY301 4.3 65.8 1.0 CG B:GLU76 4.6 32.8 1.0 CE B:LYS74 4.6 37.0 1.0 O1 A:NMY301 4.6 56.5 1.0 OE1 B:GLU76 4.6 41.0 1.0 O5 A:NMY301 4.6 64.8 1.0 C1 A:NMY301 4.7 66.7 1.0 CD B:GLU67 4.8 43.8 1.0 CG B:ASP50 4.8 44.5 1.0 N2 A:NMY301 4.9 53.4 1.0 C9 A:NMY301 5.0 66.1 1.0

B.Selvaraj, M.J.Cuneo. Catch and Release: A Novel Variation of the Archetypal Nucleotidyl Transfer Reaction To Be Published.