Magnesium in PDB 6p0y: Cryptosporidium Parvum Pyruvate Kinase in Complex with Adp

All present enzymatic activity of Cryptosporidium Parvum Pyruvate Kinase in Complex with Adp:
2.7.1.40;

The structure of Cryptosporidium Parvum Pyruvate Kinase in Complex with Adp, PDB code: 6p0y was solved by N.Schormann, D.Chattopadhyay, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.03 / 2.60
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	133.465, 105.305, 83.453, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 26.8

The structure of Cryptosporidium Parvum Pyruvate Kinase in Complex with Adp also contains other interesting chemical elements:

Potassium	(K)	2 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Magnesium atom in the Cryptosporidium Parvum Pyruvate Kinase in Complex with Adp (pdb code 6p0y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryptosporidium Parvum Pyruvate Kinase in Complex with Adp, PDB code: 6p0y:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryptosporidium Parvum Pyruvate Kinase in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryptosporidium Parvum Pyruvate Kinase in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:39.8 occ:1.00 O A:HOH789 2.3 36.9 1.0 O2A A:ADP601 2.4 49.2 1.0 O3B A:ADP601 2.5 50.3 1.0 O A:HOH760 2.6 40.0 1.0 OD2 A:ASP170 3.4 73.1 1.0 PB A:ADP601 3.4 50.6 1.0 PA A:ADP601 3.5 48.8 1.0 O A:HOH753 3.5 30.8 1.0 O3A A:ADP601 3.6 50.8 1.0 O2B A:ADP601 3.7 50.9 1.0 OD1 A:ASP170 4.1 72.5 1.0 O5' A:ADP601 4.1 49.9 1.0 CG A:ASP170 4.1 73.8 1.0 OG A:SER362 4.3 34.7 1.0 O A:HOH777 4.5 23.5 1.0 CB A:SER362 4.6 34.5 1.0 O1A A:ADP601 4.8 49.6 1.0 O1B A:ADP601 4.8 49.6 1.0 NH2 A:ARG74 5.0 34.3 1.0

Magnesium binding site 2 out of 2 in the Cryptosporidium Parvum Pyruvate Kinase in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryptosporidium Parvum Pyruvate Kinase in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:49.0 occ:1.00 O B:HOH709 2.0 38.5 1.0 O2B B:ADP601 2.3 39.9 1.0 O B:HOH774 2.5 34.7 1.0 O1A B:ADP601 2.5 44.9 1.0 PB B:ADP601 3.7 40.3 1.0 OD2 B:ASP170 3.7 68.0 1.0 PA B:ADP601 3.8 43.5 1.0 O B:HOH746 3.9 29.6 1.0 O B:HOH775 4.0 41.8 1.0 O3A B:ADP601 4.0 42.3 1.0 O B:HOH793 4.1 31.0 1.0 OG B:SER362 4.5 32.1 1.0 O5' B:ADP601 4.6 44.2 1.0 O3B B:ADP601 4.6 40.6 1.0 O1B B:ADP601 4.7 38.1 1.0 CG B:ASP170 4.7 68.8 1.0 CB B:SER362 4.8 32.3 1.0 O2A B:ADP601 4.9 42.8 1.0

N.Schormann, K.L.Hayden, P.Lee, S.Banerjee, D.Chattopadhyay. An Overview of Structure, Function, and Regulation of Pyruvate Kinases. Protein Sci. V. 28 1771 2019.
ISSN: ESSN 1469-896X
PubMed: 31342570
DOI: 10.1002/PRO.3691