Magnesium in PDB 6p2u: Structure of Mortalin-Nbd with N6-Propargyladenosine-5'-Diphosphate

The structure of Structure of Mortalin-Nbd with N6-Propargyladenosine-5'-Diphosphate, PDB code: 6p2u was solved by M.A.Moseng, R.C.Page, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.04 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.040, 68.250, 121.220, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 23.8

The binding sites of Magnesium atom in the Structure of Mortalin-Nbd with N6-Propargyladenosine-5'-Diphosphate (pdb code 6p2u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Mortalin-Nbd with N6-Propargyladenosine-5'-Diphosphate, PDB code: 6p2u:

Magnesium binding site 1 out of 1 in the Structure of Mortalin-Nbd with N6-Propargyladenosine-5'-Diphosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Mortalin-Nbd with N6-Propargyladenosine-5'-Diphosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:29.2 occ:1.00 OD1 A:ASP244 2.6 17.2 1.0 O26 A:NO7501 2.7 39.5 1.0 O21 A:NO7501 2.8 23.0 1.0 O A:HOH640 3.3 30.7 1.0 O3 A:PO4502 3.3 31.4 1.0 CA A:GLY387 3.4 14.7 1.0 O A:HOH625 3.4 22.6 1.0 O A:HOH628 3.4 20.9 1.0 CG A:ASP244 3.5 21.1 1.0 CA A:GLY246 3.6 18.9 1.0 OD2 A:ASP244 3.7 20.2 1.0 N A:GLY387 3.8 19.8 1.0 O A:HOH669 3.9 21.3 1.0 N A:GLY246 3.9 18.1 1.0 O A:HOH681 4.0 30.6 1.0 P23 A:NO7501 4.0 43.0 1.0 P19 A:NO7501 4.1 30.5 1.0 CG1 A:VAL386 4.1 23.6 1.0 O22 A:NO7501 4.4 22.9 1.0 C A:VAL386 4.4 17.3 1.0 C A:LEU245 4.5 16.9 1.0 O24 A:NO7501 4.5 37.4 1.0 O A:LEU245 4.7 14.8 1.0 O A:VAL386 4.7 15.9 1.0 P A:PO4502 4.7 29.2 1.0 C A:GLY387 4.8 23.3 1.0 O20 A:NO7501 4.9 30.8 1.0 C A:GLY246 4.9 17.8 1.0 CB A:ASP244 5.0 16.3 1.0 O25 A:NO7501 5.0 27.9 1.0

M.A.Moseng, J.C.Nix, R.C.Page. 2- and N6-Functionalized Adenosine-5'-Diphosphate Analogs For the Inhibition of Mortalin. Febs Lett. V. 593 2030 2019.
ISSN: ISSN 0014-5793
PubMed: 31177526
DOI: 10.1002/1873-3468.13475