Magnesium in PDB 6p4f: Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex

The structure of Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex, PDB code: 6p4f was solved by F.He, E.Hilario, L.Fan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.74 / 3.55
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	214.687, 92.150, 172.128, 90.00, 132.24, 90.00
R / Rfree (%)	25 / 27.2

The structure of Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex also contains other interesting chemical elements:

Chlorine

(Cl)

11 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 25;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex (pdb code 6p4f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 25 binding sites of Magnesium where determined in the Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex, PDB code: 6p4f:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 25 in the Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:57.1 occ:1.00 OD2 A:ASP155 3.1 67.1 1.0 O1 B:PO4401 3.3 0.8 1.0 N2 F:DG19 3.5 57.5 1.0 N3 E:DA8 3.6 65.0 1.0 OD1 A:ASP155 3.7 78.1 1.0 CG A:ASP155 3.7 72.5 1.0 O4' E:DA9 4.0 67.6 1.0 C2 E:DA8 4.3 63.4 1.0 C2 F:DG19 4.4 58.8 1.0 C4' E:DA9 4.4 68.7 1.0 C5' E:DA9 4.5 70.2 1.0 C1' E:DA8 4.5 68.8 1.0 N3 F:DG19 4.6 59.4 1.0 C4 E:DA8 4.6 66.1 1.0 P B:PO4401 4.8 0.8 1.0 O4' E:DA8 4.9 69.5 1.0 N9 E:DA8 5.0 67.8 1.0

Magnesium binding site 2 out of 25 in the Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:35.5 occ:1.00 CB A:GLU227 4.4 0.4 1.0 CD1 A:ILE239 4.4 56.2 1.0

Magnesium binding site 3 out of 25 in the Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:68.0 occ:1.00 OG A:SER245 3.2 0.4 1.0 O A:LEU246 3.5 98.0 1.0 O A:SER245 4.0 89.2 1.0 CB A:SER245 4.0 0.8 1.0 C A:LEU246 4.3 92.1 1.0 N A:ASN248 4.4 0.1 1.0 C A:SER245 4.4 93.9 1.0 CA A:THR247 4.5 99.7 1.0 N A:THR247 4.8 86.2 1.0 C A:THR247 4.9 0.5 1.0 CA A:SER245 4.9 97.1 1.0 CG A:ASN248 4.9 0.4 1.0

Magnesium binding site 4 out of 25 in the Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex within 5.0Å range:

Magnesium binding site 5 out of 25 in the Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex within 5.0Å range:

Magnesium binding site 6 out of 25 in the Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg506 b:81.0 occ:1.00 O A:ASP277 1.9 0.6 1.0 CD2 A:LEU275 2.4 0.3 1.0 CD1 A:LEU281 2.5 91.1 1.0 CD1 A:LEU272 3.0 97.5 1.0 C A:ASP277 3.1 0.4 1.0 CG A:LEU275 3.4 0.4 1.0 N A:PHE278 3.9 0.9 1.0 CA A:PHE278 3.9 0.9 1.0 CG A:LEU281 4.0 95.4 1.0 CB A:LEU272 4.1 0.9 1.0 CG A:LEU272 4.1 95.8 1.0 CB A:LEU275 4.2 0.2 1.0 CA A:ASP277 4.2 0.0 1.0 CA A:LEU272 4.3 0.0 1.0 CB A:ASP277 4.4 0.5 1.0 CB A:ARG280 4.4 0.9 1.0 C A:PHE278 4.4 1.0 1.0 N A:LEU281 4.6 92.1 1.0 N A:ASP277 4.7 0.1 1.0 CD1 A:LEU275 4.7 0.7 1.0 O A:LYS271 4.7 94.3 1.0 CD2 A:LEU281 4.7 0.3 1.0 N A:ARG280 4.8 0.7 1.0 CB A:LEU281 4.8 89.0 1.0 O A:PHE278 4.9 0.8 1.0 CD2 A:LEU272 4.9 87.4 1.0 CD1 A:LEU270 4.9 77.8 1.0 N A:LEU272 4.9 0.8 1.0 N A:HIS279 4.9 0.7 1.0

Magnesium binding site 7 out of 25 in the Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:49.6 occ:1.00 MG B:MG404 4.1 76.1 1.0

Magnesium binding site 8 out of 25 in the Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex within 5.0Å range:

Magnesium binding site 9 out of 25 in the Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg404 b:76.1 occ:1.00 OE2 B:GLU139 3.2 0.5 1.0 CD B:GLU139 4.0 0.7 1.0 MG B:MG402 4.1 49.6 1.0 OE1 B:GLU139 4.3 0.5 1.0

Magnesium binding site 10 out of 25 in the Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg405 b:54.9 occ:1.00 O B:LEU324 4.3 0.4 1.0 CB B:LYS328 4.5 90.2 1.0 CD2 B:LEU324 4.5 0.4 1.0 CB B:LEU324 4.6 0.8 1.0 CG B:LEU324 4.8 0.1 1.0 CA B:LYS328 4.9 98.5 1.0 C B:LEU324 4.9 98.7 1.0

F.He, E.Hilario, L.Fan. Crystal Structure of the Xpb-BAX1-Forked Dna Ternary Complex To Be Published.