Magnesium in PDB 6p7o: Structure of E. Coli MS115-1 Nucc, Apo Form

The structure of Structure of E. Coli MS115-1 Nucc, Apo Form, PDB code: 6p7o was solved by Q.Ye, R.K.Lau, K.R.Berg, K.D.Corbett, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.91 / 1.75
Space group	F 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	208.790, 208.790, 208.790, 90.00, 90.00, 90.00
R / Rfree (%)	17.1 / 19.6

The structure of Structure of E. Coli MS115-1 Nucc, Apo Form also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the Structure of E. Coli MS115-1 Nucc, Apo Form (pdb code 6p7o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of E. Coli MS115-1 Nucc, Apo Form, PDB code: 6p7o:

Magnesium binding site 1 out of 1 in the Structure of E. Coli MS115-1 Nucc, Apo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of E. Coli MS115-1 Nucc, Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:29.7 occ:1.00 O A:HOH419 1.9 33.3 1.0 OE2 A:GLU104 1.9 28.5 1.0 OD2 A:ASP73 2.0 27.4 1.0 O A:ALA105 2.1 31.3 1.0 O A:HOH423 2.1 35.1 1.0 O A:HOH514 2.1 36.2 1.0 CD A:GLU104 3.0 43.4 1.0 H A:ALA105 3.1 31.4 1.0 CG A:ASP73 3.1 31.3 1.0 C A:ALA105 3.2 32.5 1.0 OD1 A:ASP73 3.4 31.2 1.0 OE1 A:GLU104 3.6 32.0 1.0 N A:ALA105 3.7 26.2 1.0 HB3 A:ALA105 3.9 37.7 1.0 HB2 A:LYS106 3.9 36.8 1.0 CA A:ALA105 4.0 28.2 1.0 HG3 A:GLU104 4.0 39.7 1.0 CG A:GLU104 4.1 33.0 1.0 HE2 A:TYR116 4.2 70.3 1.0 HA A:LYS106 4.2 30.3 1.0 OE1 A:GLU39 4.3 63.1 1.0 N A:LYS106 4.3 24.7 1.0 CB A:ASP73 4.3 25.2 1.0 O A:GLY35 4.4 62.0 1.0 O A:HOH420 4.4 51.0 1.0 CB A:ALA105 4.5 31.4 1.0 HG3 A:LYS106 4.5 37.0 1.0 HB3 A:ASP73 4.5 30.3 1.0 HA A:GLU104 4.5 25.4 1.0 HZ2 A:LYS120 4.5 48.3 1.0 HB2 A:ASP73 4.5 30.3 1.0 HB3 A:GLU39 4.5 59.4 1.0 CA A:LYS106 4.6 25.2 1.0 HZ1 A:LYS120 4.6 48.3 1.0 CB A:LYS106 4.6 30.6 1.0 C A:GLU104 4.7 32.2 1.0 HG2 A:GLU104 4.7 39.7 1.0 HA A:ALA105 4.8 33.8 1.0 HD11 A:LEU113 4.9 37.3 1.0 HB1 A:ALA105 5.0 37.7 1.0 CA A:GLU104 5.0 21.1 1.0

R.K.Lau, Q.Ye, E.A.Birkholz, K.R.Berg, L.Patel, I.T.Mathews, J.D.Watrous, K.Ego, A.T.Whiteley, B.Lowey, J.J.Mekalanos, P.J.Kranzusch, M.Jain, J.Pogliano, K.D.Corbett. Structure and Mechanism of A Cyclic Trinucleotide-Activated Bacterial Endonuclease Mediating Bacteriophage Immunity To Be Published.