Magnesium in PDB 6pam: Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound

The structure of Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound, PDB code: 6pam was solved by C.Fan, J.T.Kaiser, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.61 / 3.70
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	129.180, 133.610, 134.260, 110.62, 98.28, 101.20
R / Rfree (%)	23.8 / 28.6

The binding sites of Magnesium atom in the Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound (pdb code 6pam). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound, PDB code: 6pam:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg702 b:74.0 occ:1.00 O2B A:ADP701 2.5 1.0 1.0 CB A:SER401 2.7 0.8 1.0 OG A:SER401 3.0 0.5 1.0 O3B A:ADP701 3.2 0.5 1.0 PB A:ADP701 3.2 0.8 1.0 OD1 A:ASP522 3.4 0.2 1.0 OD2 A:ASP522 3.4 0.2 1.0 CA A:SER401 3.7 0.4 1.0 CG A:ASP522 3.8 0.5 1.0 O1B A:ADP701 4.1 0.4 1.0 N A:SER401 4.1 0.0 1.0 OE1 A:GLU523 4.3 0.6 1.0 CD A:GLU523 4.4 0.0 1.0 O3A A:ADP701 4.6 0.3 1.0 CG A:GLU523 4.6 0.3 1.0 OE2 A:GLU523 4.8 0.4 1.0 O2A A:ADP701 4.8 0.7 1.0 O1A A:ADP701 5.0 0.3 1.0 PA A:ADP701 5.0 0.5 1.0

Magnesium binding site 2 out of 8 in the Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg702 b:92.6 occ:1.00 O2B B:ADP701 2.7 0.9 1.0 CB B:SER401 2.8 0.3 1.0 OG B:SER401 3.2 0.5 1.0 OD1 B:ASP522 3.6 0.7 1.0 CA B:SER401 3.8 0.0 1.0 OD2 B:ASP522 3.8 0.1 1.0 PB B:ADP701 3.9 0.4 1.0 N B:SER401 3.9 0.9 1.0 O3B B:ADP701 4.0 0.1 1.0 CG B:ASP522 4.1 0.1 1.0 OE1 B:GLU523 4.2 0.1 1.0 CD B:GLU523 4.4 0.3 1.0 O1A B:ADP701 4.7 0.1 1.0 CG B:GLU523 4.7 0.4 1.0 OE2 B:GLU523 4.8 0.5 1.0 CG B:LYS400 4.8 0.3 1.0 O1B B:ADP701 4.9 0.4 1.0 O2A B:ADP701 4.9 0.4 1.0 O3A B:ADP701 5.0 0.2 1.0 OE1 B:GLN442 5.0 0.8 1.0

Magnesium binding site 3 out of 8 in the Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg702 b:89.7 occ:1.00 CB C:SER401 2.8 0.9 1.0 O2B C:ADP701 2.9 0.5 1.0 O1B C:ADP701 3.2 0.9 1.0 OG C:SER401 3.3 0.9 1.0 PB C:ADP701 3.6 0.8 1.0 CA C:SER401 3.6 0.1 1.0 N C:SER401 3.7 0.6 1.0 OD2 C:ASP522 3.9 0.4 1.0 OD1 C:ASP522 3.9 0.7 1.0 OE2 C:GLU523 4.0 0.5 1.0 CD C:GLU523 4.2 0.8 1.0 CG C:ASP522 4.3 0.3 1.0 CG C:LYS400 4.4 0.8 1.0 O3B C:ADP701 4.6 0.8 1.0 CG C:GLU523 4.7 0.5 1.0 OE1 C:GLU523 4.7 0.8 1.0 C C:LYS400 4.7 0.8 1.0 O3A C:ADP701 4.8 0.6 1.0 CE C:LYS400 4.9 0.8 1.0 OE1 C:GLN442 4.9 0.7 1.0

Magnesium binding site 4 out of 8 in the Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg702 b:0.8 occ:1.00 O1B D:ADP701 3.0 0.1 1.0 CB D:SER401 3.0 0.6 1.0 OD2 D:ASP522 3.5 0.2 1.0 OG D:SER401 3.5 0.8 1.0 OD1 D:ASP522 3.6 0.8 1.0 O3B D:ADP701 3.9 0.4 1.0 CG D:ASP522 3.9 0.4 1.0 CA D:SER401 3.9 0.4 1.0 PB D:ADP701 3.9 0.1 1.0 N D:SER401 4.1 0.8 1.0 OE1 D:GLU523 4.2 0.7 1.0 CD D:GLU523 4.2 0.1 1.0 CG D:GLU523 4.5 0.9 1.0 OE2 D:GLU523 4.5 0.6 1.0 O1A D:ADP701 4.7 0.8 1.0 O2B D:ADP701 5.0 0.3 1.0 CG D:LYS400 5.0 0.8 1.0

Magnesium binding site 5 out of 8 in the Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg702 b:99.8 occ:1.00 O1B E:ADP701 2.6 0.0 1.0 CB E:SER401 3.4 0.7 1.0 OD2 E:ASP522 3.6 0.2 1.0 OE1 E:GLN442 3.8 0.4 1.0 PB E:ADP701 3.8 0.9 1.0 OG E:SER401 3.9 0.7 1.0 OD1 E:ASP522 4.0 0.4 1.0 O2B E:ADP701 4.0 0.7 1.0 CG E:ASP522 4.2 0.4 1.0 OE1 E:GLU523 4.3 0.3 1.0 CD E:GLU523 4.3 0.5 1.0 CA E:SER401 4.4 0.7 1.0 NZ E:LYS400 4.5 0.8 1.0 OE2 E:GLU523 4.5 0.4 1.0 N E:SER401 4.6 0.7 1.0 O3B E:ADP701 4.7 0.8 1.0 CG E:GLU523 4.7 0.9 1.0 CE E:LYS400 4.7 0.1 1.0 CG E:LYS400 4.8 0.8 1.0 O2A E:ADP701 4.8 0.2 1.0 CD E:GLN442 5.0 0.7 1.0 O3A E:ADP701 5.0 0.9 1.0

Magnesium binding site 6 out of 8 in the Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg702 b:0.0 occ:1.00 OG F:SER401 2.1 0.1 1.0 O2B F:ADP701 2.8 0.5 1.0 OD2 F:ASP522 3.4 0.1 1.0 CB F:SER401 3.4 0.6 1.0 OD1 F:ASP522 3.7 0.1 1.0 O1B F:ADP701 3.8 0.2 1.0 PB F:ADP701 3.9 0.0 1.0 CG F:ASP522 3.9 0.8 1.0 OE2 F:GLU523 4.0 0.4 1.0 CD F:GLU523 4.1 0.2 1.0 CA F:SER401 4.4 0.1 1.0 OE1 F:GLU523 4.5 0.7 1.0 CG F:GLU523 4.5 0.7 1.0 N F:SER401 4.7 0.9 1.0 O1A F:ADP701 4.8 0.8 1.0 O3A F:ADP701 4.9 0.7 1.0 OE1 F:GLN442 4.9 0.1 1.0

Magnesium binding site 7 out of 8 in the Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg702 b:0.7 occ:1.00 O1B G:ADP701 2.7 0.6 1.0 OE1 G:GLN442 3.0 0.2 1.0 CG G:GLU523 3.6 0.8 1.0 OD1 G:ASP522 3.7 0.1 1.0 CB G:SER401 3.8 0.9 1.0 CE1 G:HIS554 4.0 0.0 1.0 CD G:GLN442 4.1 0.5 1.0 OG G:SER401 4.1 0.8 1.0 PB G:ADP701 4.2 0.4 1.0 CG G:ASP522 4.4 0.7 1.0 OD2 G:ASP522 4.5 0.2 1.0 O1A G:ADP701 4.5 0.6 1.0 CB G:GLN442 4.6 0.9 1.0 CD G:GLU523 4.6 0.5 1.0 CB G:GLU523 4.7 0.1 1.0 OE1 G:GLU523 4.7 0.2 1.0 ND1 G:HIS554 4.8 0.3 1.0 CG G:GLN442 4.9 0.1 1.0 NE2 G:HIS554 4.9 0.9 1.0 O3A G:ADP701 4.9 0.9 1.0 NE2 G:GLN442 4.9 0.6 1.0 O3B G:ADP701 5.0 0.3 1.0

Magnesium binding site 8 out of 8 in the Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of A Bacterial ATM1-Family Abc Transporter with Mgadp Bound within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg702 b:0.1 occ:1.00 O2B H:ADP701 2.4 0.1 1.0 CB H:SER401 2.6 1.0 1.0 O3B H:ADP701 3.0 0.7 1.0 PB H:ADP701 3.2 0.1 1.0 OG H:SER401 3.2 0.1 1.0 O2A H:ADP701 3.2 0.9 1.0 OD1 H:ASP522 3.5 0.7 1.0 OE1 H:GLN442 3.6 0.3 1.0 OD2 H:ASP522 3.7 0.3 1.0 CA H:SER401 3.8 0.5 1.0 PA H:ADP701 3.8 0.2 1.0 O3A H:ADP701 4.0 0.6 1.0 O1A H:ADP701 4.0 0.1 1.0 N H:SER401 4.0 0.0 1.0 CG H:ASP522 4.0 0.0 1.0 OE2 H:GLU523 4.1 0.9 1.0 O1B H:ADP701 4.5 0.9 1.0 CD H:GLN442 4.7 0.8 1.0 CD H:GLU523 4.9 0.4 1.0

C.Fan, J.T.Kaiser, D.C.Rees. A Structural and Kinetic Framework For the Transport Cycle of A Bacterial Abc Exporter To Be Published.