Magnesium in PDB 6pb5: The E. Coli Class-II Cap-Dependent Transcription Activation Complex at the State 1 Architecture

Enzymatic activity of The E. Coli Class-II Cap-Dependent Transcription Activation Complex at the State 1 Architecture

All present enzymatic activity of The E. Coli Class-II Cap-Dependent Transcription Activation Complex at the State 1 Architecture:
2.7.7.6;

Other elements in 6pb5:

The structure of The E. Coli Class-II Cap-Dependent Transcription Activation Complex at the State 1 Architecture also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The E. Coli Class-II Cap-Dependent Transcription Activation Complex at the State 1 Architecture (pdb code 6pb5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The E. Coli Class-II Cap-Dependent Transcription Activation Complex at the State 1 Architecture, PDB code: 6pb5:

Magnesium binding site 1 out of 1 in 6pb5

Go back to Magnesium Binding Sites List in 6pb5
Magnesium binding site 1 out of 1 in the The E. Coli Class-II Cap-Dependent Transcription Activation Complex at the State 1 Architecture


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The E. Coli Class-II Cap-Dependent Transcription Activation Complex at the State 1 Architecture within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1503

b:20.0
occ:1.00
 OD1 D:ASP462 2.2 20.0 1.0
OD2 D:ASP464 2.5 20.0 1.0
O D:ASP460 2.6 20.0 1.0
CG D:ASP462 2.9 20.0 1.0
OD1 D:ASP460 3.1 20.0 1.0
H D:ASP460 3.1 20.0 1.0
OD2 D:ASP462 3.1 20.0 1.0
CG D:ASP464 3.2 20.0 1.0
OD1 D:ASP464 3.2 20.0 1.0
CG D:ASP460 3.3 20.0 1.0
OD2 D:ASP460 3.4 20.0 1.0
H D:ASP462 3.5 20.0 1.0
HH21 D:ARG425 3.6 20.0 1.0
C D:ASP460 3.7 20.0 1.0
N D:ASP460 3.9 20.0 1.0
CA D:ASP460 4.2 20.0 1.0
NH2 D:ARG425 4.2 20.0 1.0
N D:ASP462 4.2 20.0 1.0
CB D:ASP462 4.2 20.0 1.0
HH22 D:ARG425 4.2 20.0 1.0
CB D:ASP460 4.4 20.0 1.0
HB3 D:ASP462 4.5 20.0 1.0
HA D:ALA459 4.5 20.0 1.0
CB D:ASP464 4.6 20.0 1.0
CA D:ASP462 4.7 20.0 1.0
HB2 D:ASP464 4.7 20.0 1.0
N D:PHE461 4.8 20.0 1.0
HB2 D:ASP460 4.9 20.0 1.0
HB2 D:ASP462 4.9 20.0 1.0
HB3 D:ASP460 5.0 20.0 1.0

Reference:

W.Shi, Y.Jiang, Y.Deng, Z.Dong, B.Liu. Visualization of Two Architectures in Class-II Cap-Dependent Transcription Activation Plos Biol. 2020.
ISSN: ESSN 1545-7885
Page generated: Mon Dec 14 23:47:21 2020

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