Magnesium in PDB 6pd0: Crystal Structure of the Bacterial Cellulose Synthase Subunit G (Bcsg) From Escherichia Coli, Catalytic Domain

Protein crystallography data

The structure of Crystal Structure of the Bacterial Cellulose Synthase Subunit G (Bcsg) From Escherichia Coli, Catalytic Domain, PDB code: 6pd0 was solved by A.C.Anderson, T.Brenner, J.T.Weadge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.96 / 1.75
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.510, 76.920, 95.920, 90.00, 90.58, 90.00
R / Rfree (%) 16.1 / 19.9

Other elements in 6pd0:

The structure of Crystal Structure of the Bacterial Cellulose Synthase Subunit G (Bcsg) From Escherichia Coli, Catalytic Domain also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Bacterial Cellulose Synthase Subunit G (Bcsg) From Escherichia Coli, Catalytic Domain (pdb code 6pd0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Bacterial Cellulose Synthase Subunit G (Bcsg) From Escherichia Coli, Catalytic Domain, PDB code: 6pd0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6pd0

Go back to Magnesium Binding Sites List in 6pd0
Magnesium binding site 1 out of 2 in the Crystal Structure of the Bacterial Cellulose Synthase Subunit G (Bcsg) From Escherichia Coli, Catalytic Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Bacterial Cellulose Synthase Subunit G (Bcsg) From Escherichia Coli, Catalytic Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:12.1
occ:0.91
O A:ASN383 2.0 12.8 1.0
O A:HOH870 2.0 13.5 1.0
O A:HOH790 2.0 14.6 1.0
O A:HOH867 2.1 12.2 1.0
O A:THR378 2.1 15.0 1.0
OD1 A:ASP381 2.2 15.3 1.0
CG A:ASP381 3.1 15.8 1.0
C A:ASN383 3.2 15.3 1.0
C A:THR378 3.3 13.4 1.0
OD2 A:ASP381 3.5 14.1 1.0
N A:ASN383 3.8 14.7 1.0
CA A:ASN383 4.0 13.2 1.0
OE2 A:GLU236 4.1 16.4 1.0
O A:HOH1163 4.1 32.3 1.0
CA A:THR378 4.2 12.9 1.0
N A:SER384 4.2 14.7 1.0
N A:GLU379 4.2 14.8 1.0
CA A:GLU379 4.3 14.5 1.0
O A:HOH1094 4.3 25.9 1.0
O A:GLU379 4.3 17.9 1.0
C A:GLU379 4.3 16.7 1.0
N A:ASP381 4.3 14.9 1.0
CA A:SER384 4.4 19.9 1.0
OE1 A:GLU236 4.4 14.5 1.0
CB A:ASP381 4.4 15.6 1.0
CB A:ASN383 4.5 11.3 1.0
CB A:THR378 4.6 14.6 1.0
N A:LYS382 4.6 17.2 1.0
C A:SER384 4.6 19.0 1.0
CD A:GLU236 4.7 14.3 1.0
C A:ASP381 4.7 16.1 1.0
CA A:ASP381 4.7 14.3 1.0
O A:HOH1174 4.7 41.7 1.0
N A:ARG385 4.8 13.1 1.0
N A:LYS380 4.9 14.8 1.0
C A:LYS382 4.9 19.8 1.0

Magnesium binding site 2 out of 2 in 6pd0

Go back to Magnesium Binding Sites List in 6pd0
Magnesium binding site 2 out of 2 in the Crystal Structure of the Bacterial Cellulose Synthase Subunit G (Bcsg) From Escherichia Coli, Catalytic Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Bacterial Cellulose Synthase Subunit G (Bcsg) From Escherichia Coli, Catalytic Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:14.6
occ:0.96
O B:ASN383 2.0 17.4 1.0
O B:HOH807 2.0 14.3 1.0
O B:THR378 2.0 15.0 1.0
O B:HOH733 2.0 18.0 1.0
O B:HOH798 2.1 16.0 1.0
OD1 B:ASP381 2.1 16.5 1.0
CG B:ASP381 3.1 17.3 1.0
C B:ASN383 3.2 15.9 1.0
C B:THR378 3.2 14.8 1.0
OD2 B:ASP381 3.4 15.2 1.0
N B:ASN383 3.7 15.4 1.0
CA B:ASN383 3.9 15.8 1.0
OE2 B:GLU236 4.0 18.5 1.0
CA B:THR378 4.0 15.0 1.0
N B:GLU379 4.1 14.4 1.0
N B:SER384 4.2 19.6 1.0
O B:HOH1035 4.2 29.3 1.0
CA B:GLU379 4.2 18.9 1.0
O B:GLU379 4.3 20.7 1.0
C B:GLU379 4.3 21.5 1.0
N B:ASP381 4.3 13.6 1.0
O B:HOH1084 4.3 30.0 1.0
CB B:ASP381 4.4 15.9 1.0
OE1 B:GLU236 4.4 18.2 1.0
CB B:ASN383 4.4 17.2 1.0
CA B:SER384 4.4 22.4 1.0
CB B:THR378 4.4 11.5 1.0
CA B:ASP381 4.6 15.1 1.0
N B:LYS382 4.6 14.9 1.0
C B:ASP381 4.6 15.0 1.0
CD B:GLU236 4.6 16.2 1.0
C B:SER384 4.7 16.3 1.0
N B:LYS380 4.9 15.3 1.0
C B:LYS382 4.9 20.2 1.0
N B:ARG385 4.9 17.1 1.0

Reference:

A.C.Anderson, T.Brenner, J.T.Weadge. Crystal Structure of the Bacterial Cellulose Synthase Subunit G (Bcsg) From Escherichia Coli, Catalytic Domain To Be Published.
Page generated: Mon Dec 14 23:47:32 2020

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