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Magnesium in PDB 6pjw: Adenylate Kinase From Methanococcus Igneus - Amp Bound Form

Enzymatic activity of Adenylate Kinase From Methanococcus Igneus - Amp Bound Form

All present enzymatic activity of Adenylate Kinase From Methanococcus Igneus - Amp Bound Form:
2.7.4.3;

Protein crystallography data

The structure of Adenylate Kinase From Methanococcus Igneus - Amp Bound Form, PDB code: 6pjw was solved by S.Moon, J.Kim, J.L.Olmos, E.Bae, G.N.Phillips, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.33 / 2.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 88.770, 121.390, 121.040, 90.00, 102.95, 90.00
R / Rfree (%) 20 / 24.8

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Adenylate Kinase From Methanococcus Igneus - Amp Bound Form (pdb code 6pjw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Adenylate Kinase From Methanococcus Igneus - Amp Bound Form, PDB code: 6pjw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in 6pjw

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Magnesium binding site 1 out of 12 in the Adenylate Kinase From Methanococcus Igneus - Amp Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Adenylate Kinase From Methanococcus Igneus - Amp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:70.5
occ:1.00
O A:HOH408 2.0 73.3 1.0
O A:HOH407 2.0 73.2 1.0
O A:HOH410 2.0 67.9 1.0
O A:HOH412 2.1 68.3 1.0
O A:HOH402 2.1 69.8 1.0
OG1 A:THR17 2.1 67.2 1.0
HB A:THR17 3.1 53.5 1.0
CB A:THR17 3.2 68.0 1.0
HH22 A:ARG140 3.2 53.5 1.0
HH21 A:ARG140 3.3 53.5 1.0
H A:THR17 3.5 53.5 1.0
HOP3 A:AMP301 3.5 53.5 1.0
NH2 A:ARG140 3.6 79.1 1.0
OD2 A:ASP90 3.9 64.7 1.0
HH12 A:ARG138 3.9 53.5 1.0
HG21 A:THR17 4.0 53.5 1.0
O3P A:AMP302 4.0 70.0 1.0
O2P A:AMP301 4.0 59.9 1.0
HD21 A:ASN38 4.1 53.5 1.0
HOP2 A:AMP302 4.1 53.5 1.0
N A:THR17 4.1 66.5 1.0
CG2 A:THR17 4.2 71.0 1.0
O3P A:AMP301 4.2 62.3 1.0
CA A:THR17 4.2 69.2 1.0
OD1 A:ASP90 4.3 61.0 1.0
O1P A:AMP301 4.3 60.0 1.0
P A:AMP301 4.3 60.9 1.0
O2P A:AMP302 4.3 64.9 1.0
HH11 A:ARG138 4.5 53.5 1.0
NH1 A:ARG138 4.5 78.8 1.0
CG A:ASP90 4.5 63.1 1.0
HA A:THR17 4.6 53.5 1.0
HG23 A:THR17 4.6 53.5 1.0
HOP3 A:AMP302 4.6 53.5 1.0
P A:AMP302 4.6 67.4 1.0
ND2 A:ASN38 4.7 64.3 1.0
HD22 A:ASN38 4.7 53.5 1.0
HOP2 A:AMP301 4.8 53.5 1.0
HE1 A:HIS92 4.9 53.5 1.0
CZ A:ARG140 5.0 79.0 1.0
HG22 A:THR17 5.0 53.5 1.0

Magnesium binding site 2 out of 12 in 6pjw

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Magnesium binding site 2 out of 12 in the Adenylate Kinase From Methanococcus Igneus - Amp Bound Form


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Adenylate Kinase From Methanococcus Igneus - Amp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg303

b:49.1
occ:1.00
O B:HOH405 2.0 52.5 1.0
O B:HOH413 2.0 49.4 1.0
O B:HOH404 2.1 49.4 1.0
O B:HOH417 2.1 49.9 1.0
O B:HOH421 2.1 46.0 1.0
OG1 B:THR17 2.2 42.7 1.0
HB B:THR17 3.1 53.5 1.0
CB B:THR17 3.2 43.9 1.0
H B:THR17 3.4 53.5 1.0
O B:HOH401 3.6 50.3 1.0
HH12 B:ARG138 3.7 53.5 1.0
HOP3 B:AMP301 3.7 53.5 1.0
HH22 B:ARG140 3.9 53.5 1.0
HD21 B:ASN38 3.9 53.5 1.0
HG21 B:THR17 4.0 53.5 1.0
O3P B:AMP302 4.0 45.8 1.0
HH21 B:ARG140 4.0 53.5 1.0
OD2 B:ASP90 4.1 45.9 1.0
N B:THR17 4.1 44.6 1.0
O2P B:AMP302 4.1 44.8 1.0
O1P B:AMP301 4.1 47.9 1.0
O2P B:AMP301 4.1 44.8 1.0
CG2 B:THR17 4.2 45.2 1.0
O3P B:AMP301 4.2 49.9 1.0
CA B:THR17 4.2 45.4 1.0
P B:AMP301 4.3 46.8 1.0
NH2 B:ARG140 4.3 60.5 1.0
NH1 B:ARG138 4.3 58.3 1.0
O B:HOH424 4.3 50.7 1.0
HH11 B:ARG138 4.4 53.5 1.0
HD22 B:ASN38 4.4 53.5 1.0
OD1 B:ASP90 4.4 43.7 1.0
P B:AMP302 4.5 45.9 1.0
ND2 B:ASN38 4.5 46.3 1.0
HA B:THR17 4.6 53.5 1.0
HOP3 B:AMP302 4.7 53.5 1.0
CG B:ASP90 4.7 44.4 1.0
O B:HOH416 4.8 50.7 1.0
HE2 B:HIS92 4.8 53.5 1.0
HG23 B:THR17 4.8 53.5 1.0
O1P B:AMP302 4.8 44.8 1.0
HG22 B:THR17 4.8 53.5 1.0
HOP2 B:AMP302 4.9 53.5 1.0

Magnesium binding site 3 out of 12 in 6pjw

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Magnesium binding site 3 out of 12 in the Adenylate Kinase From Methanococcus Igneus - Amp Bound Form


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Adenylate Kinase From Methanococcus Igneus - Amp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg303

b:54.5
occ:1.00
OG1 C:THR17 2.0 52.3 1.0
O C:HOH406 2.0 57.8 1.0
O C:HOH419 2.0 51.9 1.0
O C:HOH413 2.1 56.4 1.0
O C:HOH408 2.1 53.1 1.0
O C:HOH414 2.1 53.9 1.0
HB C:THR17 3.0 53.5 1.0
CB C:THR17 3.1 52.9 1.0
H C:THR17 3.5 53.5 1.0
HOP3 C:AMP301 3.7 53.5 1.0
O2P C:AMP301 3.9 55.8 1.0
HH12 C:ARG138 3.9 53.5 1.0
HG21 C:THR17 3.9 53.5 1.0
HOP2 C:AMP302 4.0 53.5 1.0
HD21 C:ASN38 4.0 53.5 1.0
N C:THR17 4.0 49.2 1.0
OD2 C:ASP90 4.1 54.5 1.0
O1P C:AMP301 4.1 55.6 1.0
CA C:THR17 4.1 51.5 1.0
CG2 C:THR17 4.1 55.4 1.0
O3P C:AMP301 4.1 56.1 1.0
P C:AMP301 4.2 56.9 1.0
OD1 C:ASP90 4.2 51.2 1.0
O2P C:AMP302 4.3 49.9 1.0
HA C:THR17 4.3 53.5 1.0
O3P C:AMP302 4.3 50.0 1.0
HD22 C:ASN38 4.4 53.5 1.0
O1P C:AMP302 4.4 52.8 1.0
HOP3 C:AMP302 4.5 53.5 1.0
ND2 C:ASN38 4.5 57.5 1.0
P C:AMP302 4.6 51.9 1.0
CG C:ASP90 4.6 53.1 1.0
HOP2 C:AMP301 4.6 53.5 1.0
HG23 C:THR17 4.7 53.5 1.0
NH1 C:ARG138 4.7 79.3 1.0
HG22 C:THR17 4.8 53.5 1.0
HH11 C:ARG138 5.0 53.5 1.0

Magnesium binding site 4 out of 12 in 6pjw

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Magnesium binding site 4 out of 12 in the Adenylate Kinase From Methanococcus Igneus - Amp Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Adenylate Kinase From Methanococcus Igneus - Amp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg303

b:57.7
occ:1.00
O D:HOH404 2.0 60.2 1.0
O D:HOH414 2.0 55.4 1.0
O D:HOH411 2.1 58.9 1.0
O D:HOH415 2.1 56.4 1.0
O D:HOH416 2.1 58.0 1.0
OG1 D:THR17 2.1 53.7 1.0
HB D:THR17 3.1 53.5 1.0
CB D:THR17 3.2 54.5 1.0
H D:THR17 3.5 53.5 1.0
HOP3 D:AMP301 3.6 53.5 1.0
HH12 D:ARG138 3.6 53.5 1.0
HOP2 D:AMP302 3.7 53.5 1.0
HG21 D:THR17 3.9 53.5 1.0
O2P D:AMP301 4.0 54.2 1.0
O3P D:AMP302 4.0 54.7 1.0
O3P D:AMP301 4.1 58.1 1.0
HD21 D:ASN38 4.1 53.5 1.0
CG2 D:THR17 4.1 56.3 1.0
N D:THR17 4.1 52.9 1.0
O1P D:AMP301 4.2 55.3 1.0
P D:AMP301 4.2 54.9 1.0
CA D:THR17 4.2 54.6 1.0
HH21 D:ARG140 4.3 53.5 1.0
O2P D:AMP302 4.3 52.5 1.0
NH1 D:ARG138 4.3 65.4 1.0
HH22 D:ARG140 4.4 53.5 1.0
OD2 D:ASP90 4.4 52.6 1.0
HOP2 D:AMP301 4.5 53.5 1.0
HD22 D:ASN38 4.5 53.5 1.0
HA D:THR17 4.5 53.5 1.0
OD1 D:ASP90 4.6 49.9 1.0
HH22 D:ARG138 4.6 53.5 1.0
P D:AMP302 4.6 54.2 1.0
ND2 D:ASN38 4.7 55.0 1.0
HH11 D:ARG138 4.7 53.5 1.0
NH2 D:ARG140 4.7 65.9 1.0
HOP3 D:AMP302 4.7 53.5 1.0
HG23 D:THR17 4.7 53.5 1.0
HG22 D:THR17 4.8 53.5 1.0
HE1 D:HIS92 4.9 53.5 1.0
CG D:ASP90 4.9 51.2 1.0

Magnesium binding site 5 out of 12 in 6pjw

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Magnesium binding site 5 out of 12 in the Adenylate Kinase From Methanococcus Igneus - Amp Bound Form


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Adenylate Kinase From Methanococcus Igneus - Amp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg303

b:55.7
occ:1.00
O E:HOH402 2.0 58.6 1.0
O E:HOH417 2.0 54.4 1.0
O E:HOH406 2.0 53.2 1.0
O E:HOH412 2.1 57.7 1.0
O E:HOH409 2.1 56.3 1.0
OG1 E:THR17 2.2 53.8 1.0
HB E:THR17 3.2 53.5 1.0
CB E:THR17 3.3 54.5 1.0
H E:THR17 3.4 53.5 1.0
HOP3 E:AMP301 3.7 53.5 1.0
HH21 E:ARG140 3.8 53.5 1.0
HH22 E:ARG140 3.8 53.5 1.0
HH12 E:ARG138 3.8 53.5 1.0
HD21 E:ASN38 3.9 53.5 1.0
O2P E:AMP301 3.9 47.8 1.0
O3P E:AMP302 4.0 53.2 1.0
O1P E:AMP301 4.0 50.2 1.0
N E:THR17 4.1 52.8 1.0
HG21 E:THR17 4.1 53.5 1.0
NH2 E:ARG140 4.1 64.7 1.0
OD1 E:ASP90 4.1 50.9 1.0
HOP2 E:AMP302 4.2 53.5 1.0
P E:AMP301 4.2 49.8 1.0
O3P E:AMP301 4.3 52.6 1.0
CA E:THR17 4.3 54.2 1.0
OD2 E:ASP90 4.3 53.5 1.0
CG2 E:THR17 4.3 56.4 1.0
HD22 E:ASN38 4.4 53.5 1.0
NH1 E:ARG138 4.4 66.7 1.0
O2P E:AMP302 4.4 52.3 1.0
ND2 E:ASN38 4.5 51.6 1.0
HH11 E:ARG138 4.5 53.5 1.0
HOP3 E:AMP302 4.5 53.5 1.0
HA E:THR17 4.6 53.5 1.0
P E:AMP302 4.6 53.5 1.0
CG E:ASP90 4.7 51.8 1.0
HOP2 E:AMP301 4.8 53.5 1.0
HG23 E:THR17 4.9 53.5 1.0
O1P E:AMP302 4.9 52.6 1.0
HG22 E:THR17 4.9 53.5 1.0

Magnesium binding site 6 out of 12 in 6pjw

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Magnesium binding site 6 out of 12 in the Adenylate Kinase From Methanococcus Igneus - Amp Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Adenylate Kinase From Methanococcus Igneus - Amp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg303

b:49.4
occ:1.00
O F:HOH408 2.0 50.6 1.0
O F:HOH402 2.0 48.6 1.0
O F:HOH410 2.1 49.1 1.0
O F:HOH416 2.1 47.4 1.0
O F:HOH413 2.1 51.9 1.0
OG1 F:THR17 2.1 52.3 1.0
HB F:THR17 3.1 53.5 1.0
CB F:THR17 3.2 52.6 1.0
H F:THR17 3.4 53.5 1.0
HH22 F:ARG140 3.6 53.5 1.0
HH12 F:ARG138 3.7 53.5 1.0
O2P F:AMP301 3.8 51.7 1.0
HOP2 F:AMP302 3.8 53.5 1.0
OD2 F:ASP90 4.0 54.8 1.0
OD1 F:ASP90 4.0 52.2 1.0
N F:THR17 4.0 52.2 1.0
HG21 F:THR17 4.0 53.5 1.0
CA F:THR17 4.1 54.0 1.0
HH12 F:ARG140 4.2 53.5 1.0
HD21 F:ASN38 4.2 53.5 1.0
CG2 F:THR17 4.2 54.6 1.0
O3P F:AMP301 4.3 51.3 1.0
P F:AMP301 4.3 52.6 1.0
O1P F:AMP301 4.4 51.8 1.0
HA F:THR17 4.4 53.5 1.0
O3P F:AMP302 4.4 51.7 1.0
O2P F:AMP302 4.4 51.8 1.0
NH2 F:ARG140 4.4 70.6 1.0
CG F:ASP90 4.5 53.8 1.0
NH1 F:ARG138 4.5 75.6 1.0
HOP2 F:AMP301 4.5 53.5 1.0
HD22 F:ASN38 4.6 53.5 1.0
O F:HOH411 4.7 50.3 1.0
ND2 F:ASN38 4.8 55.0 1.0
P F:AMP302 4.8 53.1 1.0
HH11 F:ARG138 4.8 53.5 1.0
HG23 F:THR17 4.8 53.5 1.0
HOP3 F:AMP301 4.8 53.5 1.0
HG22 F:THR17 4.9 53.5 1.0
HH22 F:ARG138 4.9 53.5 1.0
HOP3 F:AMP302 4.9 53.5 1.0
HE1 F:HIS92 4.9 53.5 1.0
O1P F:AMP302 4.9 53.4 1.0
NH1 F:ARG140 4.9 69.1 1.0
HH21 F:ARG140 4.9 53.5 1.0

Magnesium binding site 7 out of 12 in 6pjw

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Magnesium binding site 7 out of 12 in the Adenylate Kinase From Methanococcus Igneus - Amp Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Adenylate Kinase From Methanococcus Igneus - Amp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg303

b:70.8
occ:1.00
O G:HOH405 2.0 69.3 1.0
O G:HOH402 2.0 73.2 1.0
O G:HOH404 2.0 74.2 1.0
O G:HOH409 2.1 67.7 1.0
O G:HOH408 2.1 69.9 1.0
OG1 G:THR17 2.1 75.8 1.0
HB G:THR17 3.0 53.5 1.0
CB G:THR17 3.1 77.3 1.0
HH12 G:ARG138 3.3 53.5 1.0
H G:THR17 3.5 53.5 1.0
HOP3 G:AMP301 3.7 53.5 1.0
O G:HOH401 3.7 53.5 1.0
O3P G:AMP302 3.7 72.6 1.0
O2P G:AMP301 3.8 69.2 1.0
HD21 G:ASN38 3.8 53.5 1.0
OD2 G:ASP90 3.8 77.8 1.0
O3P G:AMP301 3.9 73.1 1.0
HG21 G:THR17 3.9 53.5 1.0
NH1 G:ARG138 4.0 79.8 1.0
O1P G:AMP301 4.0 69.1 1.0
N G:THR17 4.1 74.9 1.0
P G:AMP301 4.1 70.5 1.0
HH11 G:ARG138 4.1 53.5 1.0
CG2 G:THR17 4.1 81.2 1.0
CA G:THR17 4.2 78.3 1.0
OD1 G:ASP90 4.2 73.5 1.0
HOP3 G:AMP302 4.2 53.5 1.0
O2P G:AMP302 4.3 69.5 1.0
HOP2 G:AMP302 4.3 53.5 1.0
HD22 G:ASN38 4.3 53.5 1.0
ND2 G:ASN38 4.4 75.7 1.0
CG G:ASP90 4.5 75.8 1.0
HH22 G:ARG140 4.5 53.5 1.0
HA G:THR17 4.5 53.5 1.0
P G:AMP302 4.6 72.8 1.0
HOP2 G:AMP301 4.7 53.5 1.0
HG23 G:THR17 4.7 53.5 1.0
HH21 G:ARG140 4.7 53.5 1.0
HE1 G:HIS92 4.8 53.5 1.0
HG22 G:THR17 4.8 53.5 1.0
HH22 G:ARG138 4.9 53.5 1.0
NH2 G:ARG140 4.9 79.6 1.0

Magnesium binding site 8 out of 12 in 6pjw

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Magnesium binding site 8 out of 12 in the Adenylate Kinase From Methanococcus Igneus - Amp Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Adenylate Kinase From Methanococcus Igneus - Amp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg303

b:72.5
occ:1.00
O H:HOH406 2.0 72.3 1.0
O H:HOH410 2.0 69.7 1.0
O H:HOH403 2.0 73.0 1.0
O H:HOH412 2.1 69.7 1.0
O H:HOH402 2.1 75.9 1.0
OG1 H:THR17 2.2 66.0 1.0
HOP2 H:AMP301 3.0 53.5 1.0
HB H:THR17 3.1 53.5 1.0
CB H:THR17 3.2 68.7 1.0
HH12 H:ARG138 3.4 53.5 1.0
H H:THR17 3.4 53.5 1.0
HOP3 H:AMP301 3.5 53.5 1.0
O3P H:AMP302 3.6 62.0 1.0
HH22 H:ARG140 3.7 53.5 1.0
O2P H:AMP301 3.8 68.9 1.0
OD2 H:ASP90 3.9 70.2 1.0
HG21 H:THR17 4.0 53.5 1.0
HOP3 H:AMP302 4.0 53.5 1.0
N H:THR17 4.1 67.1 1.0
O3P H:AMP301 4.1 72.8 1.0
HD21 H:ASN38 4.1 53.5 1.0
HH21 H:ARG140 4.2 53.5 1.0
HOP2 H:AMP302 4.2 53.5 1.0
CG2 H:THR17 4.2 71.4 1.0
O1P H:AMP301 4.2 68.3 1.0
NH1 H:ARG138 4.2 86.0 1.0
P H:AMP301 4.2 69.1 1.0
CA H:THR17 4.3 69.3 1.0
NH2 H:ARG140 4.3 79.6 1.0
O2P H:AMP302 4.4 64.0 1.0
HH11 H:ARG138 4.4 53.5 1.0
HD22 H:ASN38 4.5 53.5 1.0
P H:AMP302 4.6 67.5 1.0
HA H:THR17 4.6 53.5 1.0
OD1 H:ASP90 4.6 66.3 1.0
ND2 H:ASN38 4.6 68.1 1.0
CG H:ASP90 4.7 68.4 1.0
HE1 H:HIS92 4.8 53.5 1.0
HG22 H:THR17 4.8 53.5 1.0
HG23 H:THR17 4.8 53.5 1.0
HH22 H:ARG138 4.9 53.5 1.0

Magnesium binding site 9 out of 12 in 6pjw

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Magnesium binding site 9 out of 12 in the Adenylate Kinase From Methanococcus Igneus - Amp Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Adenylate Kinase From Methanococcus Igneus - Amp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg303

b:88.7
occ:1.00
OG1 I:THR17 1.9 73.7 1.0
O I:HOH407 2.0 94.2 1.0
O I:HOH408 2.0 82.6 1.0
O I:HOH402 2.0 92.1 1.0
O I:HOH405 2.0 83.5 1.0
O I:HOH409 2.0 85.5 1.0
HB I:THR17 3.0 53.5 1.0
CB I:THR17 3.0 74.3 1.0
O I:HOH401 3.1 53.5 1.0
H I:THR17 3.3 53.5 1.0
HG21 I:THR17 3.9 53.5 1.0
N I:THR17 3.9 68.8 1.0
CA I:THR17 4.0 74.5 1.0
HH12 I:ARG138 4.0 53.5 1.0
O1P I:AMP301 4.0 75.4 1.0
CG2 I:THR17 4.1 78.8 1.0
OD2 I:ASP90 4.1 77.3 1.0
O3P I:AMP302 4.1 78.9 1.0
OD1 I:ASP90 4.1 67.4 1.0
HD21 I:ASN38 4.2 53.5 1.0
O2P I:AMP301 4.2 83.5 1.0
HA I:THR17 4.3 53.5 1.0
HOP2 I:AMP301 4.3 53.5 1.0
O3P I:AMP301 4.4 83.5 1.0
P I:AMP301 4.4 78.8 1.0
HOP2 I:AMP302 4.4 53.5 1.0
O2P I:AMP302 4.4 69.4 1.0
HH11 I:ARG138 4.5 53.5 1.0
CG I:ASP90 4.5 72.0 1.0
HD22 I:ASN38 4.5 53.5 1.0
P I:AMP302 4.6 73.3 1.0
HH22 I:ARG140 4.6 53.5 1.0
NH1 I:ARG138 4.6 93.2 1.0
HOP3 I:AMP301 4.6 53.5 1.0
HG23 I:THR17 4.7 53.5 1.0
HG22 I:THR17 4.7 53.5 1.0
ND2 I:ASN38 4.7 76.4 1.0
HE2 I:HIS92 4.7 53.5 1.0
O1P I:AMP302 4.7 73.9 1.0
HOP3 I:AMP302 4.8 53.5 1.0

Magnesium binding site 10 out of 12 in 6pjw

Go back to Magnesium Binding Sites List in 6pjw
Magnesium binding site 10 out of 12 in the Adenylate Kinase From Methanococcus Igneus - Amp Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Adenylate Kinase From Methanococcus Igneus - Amp Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg303

b:55.0
occ:1.00
O J:HOH409 2.0 54.0 1.0
O J:HOH413 2.0 52.3 1.0
O J:HOH404 2.0 56.8 1.0
OG1 J:THR17 2.0 59.0 1.0
O J:HOH415 2.1 54.8 1.0
O J:HOH410 2.1 58.5 1.0
HB J:THR17 3.1 53.5 1.0
CB J:THR17 3.1 59.5 1.0
H J:THR17 3.4 53.5 1.0
HH12 J:ARG138 3.8 53.5 1.0
HOP3 J:AMP301 3.8 53.5 1.0
HD21 J:ASN38 3.9 53.5 1.0
HG21 J:THR17 3.9 53.5 1.0
HH22 J:ARG140 3.9 53.5 1.0
O3P J:AMP302 4.0 58.7 1.0
HOP2 J:AMP302 4.1 53.5 1.0
N J:THR17 4.1 56.3 1.0
CG2 J:THR17 4.1 62.4 1.0
OD2 J:ASP90 4.1 62.3 1.0
CA J:THR17 4.2 58.9 1.0
O2P J:AMP301 4.2 61.3 1.0
O3P J:AMP301 4.2 64.5 1.0
OD1 J:ASP90 4.2 58.8 1.0
HOP2 J:AMP301 4.3 53.5 1.0
HD22 J:ASN38 4.3 53.5 1.0
HH21 J:ARG140 4.3 53.5 1.0
O1P J:AMP301 4.3 62.0 1.0
P J:AMP301 4.3 62.8 1.0
O2P J:AMP302 4.4 53.5 1.0
ND2 J:ASN38 4.4 63.2 1.0
NH2 J:ARG140 4.5 71.8 1.0
HA J:THR17 4.5 53.5 1.0
NH1 J:ARG138 4.6 78.0 1.0
HOP3 J:AMP302 4.6 53.5 1.0
CG J:ASP90 4.6 60.7 1.0
HG23 J:THR17 4.6 53.5 1.0
P J:AMP302 4.7 55.6 1.0
HH11 J:ARG138 4.8 53.5 1.0
HG22 J:THR17 4.8 53.5 1.0
O1P J:AMP302 5.0 56.4 1.0

Reference:

E.Bae, S.Moon, J.Kim, J.L.Olmos, E.Bae, G.N.Phillips. N/A N/A.
Page generated: Tue Oct 1 14:11:25 2024

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