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Magnesium in PDB 6pnj: Structure of Photosystem I Acclimated to Far-Red Light

Enzymatic activity of Structure of Photosystem I Acclimated to Far-Red Light

All present enzymatic activity of Structure of Photosystem I Acclimated to Far-Red Light:
1.97.1.12;

Other elements in 6pnj:

The structure of Structure of Photosystem I Acclimated to Far-Red Light also contains other interesting chemical elements:

Iron (Fe) 36 atoms
Calcium (Ca) 3 atoms

Magnesium Binding Sites:

Magnesium binding site 1 out of 267 in 6pnj

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Magnesium binding site 1 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:6.6
occ:1.00
MG A:CL0801 0.0 6.6 1.0
ND A:CL0801 2.0 6.6 1.0
NB A:CL0801 2.1 6.6 1.0
NC A:CL0801 2.1 6.6 1.0
NA A:CL0801 2.2 6.6 1.0
C4D A:CL0801 2.9 6.6 1.0
C4B A:CL0801 3.0 6.6 1.0
NE2 A:HIS713 3.0 8.8 1.0
C1B A:CL0801 3.1 6.6 1.0
C1C A:CL0801 3.1 6.6 1.0
C1D A:CL0801 3.1 6.6 1.0
C4A A:CL0801 3.1 6.6 1.0
C4C A:CL0801 3.1 6.6 1.0
C1A A:CL0801 3.2 6.6 1.0
CHC A:CL0801 3.4 6.6 1.0
CHB A:CL0801 3.4 6.6 1.0
CHA A:CL0801 3.5 6.6 1.0
CHD A:CL0801 3.5 6.6 1.0
CD2 A:HIS713 3.6 8.8 1.0
CAB B:CLA803 3.8 21.2 1.0
C3B B:CLA803 3.9 21.2 1.0
C4B B:CLA803 4.1 21.2 1.0
CHC B:CLA803 4.1 21.2 1.0
C3D A:CL0801 4.1 6.6 1.0
CE1 A:HIS713 4.1 8.8 1.0
C3B A:CL0801 4.3 6.6 1.0
C2D A:CL0801 4.3 6.6 1.0
C2B A:CL0801 4.4 6.6 1.0
C3C A:CL0801 4.4 6.6 1.0
C2C A:CL0801 4.4 6.6 1.0
C3A A:CL0801 4.4 6.6 1.0
C2A A:CL0801 4.5 6.6 1.0
CBB B:CLA803 4.6 21.2 1.0
C2B B:CLA803 4.6 21.2 1.0
NB B:CLA803 4.8 21.2 1.0
C1C B:CLA803 4.9 21.2 1.0
CG A:HIS713 4.9 8.8 1.0
CZ B:PHE627 4.9 11.6 1.0
CBD A:CL0801 5.0 6.6 1.0

Magnesium binding site 2 out of 267 in 6pnj

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Magnesium binding site 2 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:3.9
occ:1.00
MG A:CLA802 0.0 3.9 1.0
ND A:CLA802 2.0 3.9 1.0
NB A:CLA802 2.0 3.9 1.0
NC A:CLA802 2.1 3.9 1.0
NA A:CLA802 2.2 3.9 1.0
C4D A:CLA802 2.9 3.9 1.0
C4B A:CLA802 3.0 3.9 1.0
C1B A:CLA802 3.0 3.9 1.0
C1C A:CLA802 3.1 3.9 1.0
C1D A:CLA802 3.1 3.9 1.0
C4C A:CLA802 3.1 3.9 1.0
C4A A:CLA802 3.1 3.9 1.0
C1A A:CLA802 3.2 3.9 1.0
CHC A:CLA802 3.4 3.9 1.0
CHB A:CLA802 3.4 3.9 1.0
CHA A:CLA802 3.4 3.9 1.0
CHD A:CLA802 3.5 3.9 1.0
CBB B:CLA804 3.6 5.2 1.0
C3D A:CLA802 4.1 3.9 1.0
CB B:ALA665 4.3 5.3 1.0
C3B A:CLA802 4.3 3.9 1.0
C2D A:CLA802 4.3 3.9 1.0
CAB B:CLA804 4.3 5.2 1.0
C2B A:CLA802 4.3 3.9 1.0
OD1 A:ASN637 4.4 9.4 1.0
C2C A:CLA802 4.4 3.9 1.0
C3C A:CLA802 4.4 3.9 1.0
C3A A:CLA802 4.5 3.9 1.0
C2A A:CLA802 4.5 3.9 1.0
CHC B:CLA804 4.8 5.2 1.0
CBD A:CLA802 4.9 3.9 1.0
C3B B:CLA804 5.0 5.2 1.0
C2 A:CL0801 5.0 6.6 1.0

Magnesium binding site 3 out of 267 in 6pnj

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Magnesium binding site 3 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:7.4
occ:1.00
MG A:CLA803 0.0 7.4 1.0
ND A:CLA803 2.0 7.4 1.0
NB A:CLA803 2.0 7.4 1.0
NC A:CLA803 2.1 7.4 1.0
NA A:CLA803 2.2 7.4 1.0
C4D A:CLA803 2.9 7.4 1.0
C1B A:CLA803 3.0 7.4 1.0
C4B A:CLA803 3.0 7.4 1.0
C1D A:CLA803 3.1 7.4 1.0
C1C A:CLA803 3.1 7.4 1.0
C4A A:CLA803 3.1 7.4 1.0
C4C A:CLA803 3.1 7.4 1.0
C1A A:CLA803 3.2 7.4 1.0
CHC A:CLA803 3.4 7.4 1.0
CHB A:CLA803 3.4 7.4 1.0
SD A:MET721 3.4 7.3 1.0
CHD A:CLA803 3.5 7.4 1.0
CZ2 B:TRP589 3.5 4.5 1.0
CHA A:CLA803 3.5 7.4 1.0
NE1 B:TRP589 3.8 4.5 1.0
CE2 B:TRP589 4.0 4.5 1.0
CG A:MET721 4.0 7.3 1.0
C3D A:CLA803 4.2 7.4 1.0
C2D A:CLA803 4.3 7.4 1.0
C3B A:CLA803 4.3 7.4 1.0
CB A:MET721 4.3 7.3 1.0
C2B A:CLA803 4.3 7.4 1.0
C2C A:CLA803 4.4 7.4 1.0
C3C A:CLA803 4.4 7.4 1.0
C3A A:CLA803 4.4 7.4 1.0
CE A:MET721 4.4 7.3 1.0
C2A A:CLA803 4.5 7.4 1.0
CH2 B:TRP589 4.6 4.5 1.0
CBD A:CLA803 5.0 7.4 1.0
CMC A:CLA850 5.0 8.9 1.0

Magnesium binding site 4 out of 267 in 6pnj

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Magnesium binding site 4 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg804

b:29.6
occ:1.00
MG A:CLA804 0.0 29.6 1.0
ND A:CLA804 2.0 29.6 1.0
NB A:CLA804 2.1 29.6 1.0
NC A:CLA804 2.1 29.6 1.0
NA A:CLA804 2.2 29.6 1.0
C4D A:CLA804 2.9 29.6 1.0
C4B A:CLA804 3.0 29.6 1.0
C1B A:CLA804 3.1 29.6 1.0
C1C A:CLA804 3.1 29.6 1.0
C1D A:CLA804 3.1 29.6 1.0
NE2 A:HIS51 3.1 17.6 1.0
C4A A:CLA804 3.1 29.6 1.0
C4C A:CLA804 3.2 29.6 1.0
C1A A:CLA804 3.2 29.6 1.0
CHC A:CLA804 3.4 29.6 1.0
CHB A:CLA804 3.4 29.6 1.0
CHA A:CLA804 3.5 29.6 1.0
CHD A:CLA804 3.5 29.6 1.0
CB J:PRO14 3.6 35.8 1.0
CG J:PRO14 3.8 35.8 1.0
CE1 A:HIS51 3.9 17.6 1.0
CD2 A:HIS51 4.0 17.6 1.0
C3D A:CLA804 4.1 29.6 1.0
C3B A:CLA804 4.3 29.6 1.0
C2D A:CLA804 4.4 29.6 1.0
C2B A:CLA804 4.4 29.6 1.0
C2C A:CLA804 4.4 29.6 1.0
C3C A:CLA804 4.4 29.6 1.0
C39 J:BCR102 4.5 45.9 1.0
C3A A:CLA804 4.5 29.6 1.0
C2A A:CLA804 4.5 29.6 1.0
C29 J:BCR102 4.7 45.9 1.0
CD J:PRO14 4.8 35.8 1.0
ND1 A:HIS51 4.9 17.6 1.0
CBD A:CLA804 5.0 29.6 1.0

Magnesium binding site 5 out of 267 in 6pnj

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Magnesium binding site 5 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg805

b:21.9
occ:1.00
MG A:CLA805 0.0 21.9 1.0
ND A:CLA805 2.0 21.9 1.0
NB A:CLA805 2.1 21.9 1.0
NC A:CLA805 2.1 21.9 1.0
NA A:CLA805 2.2 21.9 1.0
C4D A:CLA805 2.9 21.9 1.0
NE2 A:HIS55 3.0 16.8 1.0
C4B A:CLA805 3.0 21.9 1.0
C1B A:CLA805 3.1 21.9 1.0
C1C A:CLA805 3.1 21.9 1.0
C1D A:CLA805 3.1 21.9 1.0
C4A A:CLA805 3.1 21.9 1.0
C4C A:CLA805 3.2 21.9 1.0
C1A A:CLA805 3.2 21.9 1.0
CHC A:CLA805 3.4 21.9 1.0
CHB A:CLA805 3.4 21.9 1.0
CHA A:CLA805 3.5 21.9 1.0
CHD A:CLA805 3.5 21.9 1.0
C4 A:CLA805 3.5 21.9 1.0
CE1 A:HIS55 3.9 16.8 1.0
CD2 A:HIS55 4.0 16.8 1.0
C3D A:CLA805 4.1 21.9 1.0
C3B A:CLA805 4.3 21.9 1.0
C2D A:CLA805 4.3 21.9 1.0
C3 A:CLA805 4.4 21.9 1.0
C2B A:CLA805 4.4 21.9 1.0
C2C A:CLA805 4.4 21.9 1.0
C3C A:CLA805 4.4 21.9 1.0
C3A A:CLA805 4.5 21.9 1.0
C2A A:CLA805 4.5 21.9 1.0
C6 A:CLA805 4.7 21.9 1.0
C7 A:CLA805 4.8 21.9 1.0
C2 A:CLA805 4.9 21.9 1.0
CBD A:CLA805 4.9 21.9 1.0

Magnesium binding site 6 out of 267 in 6pnj

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Magnesium binding site 6 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg806

b:14.1
occ:1.00
MG A:CLA806 0.0 14.1 1.0
ND A:CLA806 2.0 14.1 1.0
NB A:CLA806 2.1 14.1 1.0
NC A:CLA806 2.1 14.1 1.0
NA A:CLA806 2.2 14.1 1.0
C4D A:CLA806 2.9 14.1 1.0
C4B A:CLA806 3.0 14.1 1.0
NE2 A:HIS75 3.0 12.3 1.0
C1C A:CLA806 3.1 14.1 1.0
C1B A:CLA806 3.1 14.1 1.0
C1D A:CLA806 3.1 14.1 1.0
C4A A:CLA806 3.1 14.1 1.0
C4C A:CLA806 3.1 14.1 1.0
C1A A:CLA806 3.2 14.1 1.0
CMB A:CLA831 3.3 12.2 1.0
CHC A:CLA806 3.4 14.1 1.0
CHB A:CLA806 3.4 14.1 1.0
CHA A:CLA806 3.5 14.1 1.0
CD2 A:HIS75 3.5 12.3 1.0
CHD A:CLA806 3.6 14.1 1.0
CE1 A:HIS75 4.1 12.3 1.0
C3D A:CLA806 4.1 14.1 1.0
C3B A:CLA806 4.3 14.1 1.0
C2D A:CLA806 4.4 14.1 1.0
C2C A:CLA806 4.4 14.1 1.0
C2B A:CLA806 4.4 14.1 1.0
C3C A:CLA806 4.4 14.1 1.0
C3A A:CLA806 4.4 14.1 1.0
CBB A:CLA831 4.5 12.2 1.0
C2A A:CLA806 4.5 14.1 1.0
C2B A:CLA831 4.6 12.2 1.0
CG2 A:ILE71 4.7 17.4 1.0
CG A:HIS75 4.7 12.3 1.0
CBD A:CLA806 4.9 14.1 1.0
ND1 A:HIS75 5.0 12.3 1.0

Magnesium binding site 7 out of 267 in 6pnj

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Magnesium binding site 7 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg807

b:12.4
occ:1.00
MG A:CLA807 0.0 12.4 1.0
ND A:CLA807 2.0 12.4 1.0
NB A:CLA807 2.1 12.4 1.0
NC A:CLA807 2.1 12.4 1.0
NA A:CLA807 2.2 12.4 1.0
C4D A:CLA807 2.9 12.4 1.0
C4B A:CLA807 3.0 12.4 1.0
NE2 A:HIS78 3.0 11.4 1.0
C1B A:CLA807 3.1 12.4 1.0
C1C A:CLA807 3.1 12.4 1.0
C1D A:CLA807 3.1 12.4 1.0
C4A A:CLA807 3.1 12.4 1.0
C4C A:CLA807 3.1 12.4 1.0
C1A A:CLA807 3.2 12.4 1.0
CHC A:CLA807 3.4 12.4 1.0
CHB A:CLA807 3.4 12.4 1.0
CHA A:CLA807 3.5 12.4 1.0
CHD A:CLA807 3.5 12.4 1.0
C16 A:CLA807 3.6 12.4 1.0
CD2 A:HIS78 3.9 11.4 1.0
CE1 A:HIS78 4.0 11.4 1.0
C17 A:CLA807 4.1 12.4 1.0
C3D A:CLA807 4.1 12.4 1.0
C18 A:CLA807 4.2 12.4 1.0
C3B A:CLA807 4.3 12.4 1.0
C2D A:CLA807 4.4 12.4 1.0
C2B A:CLA807 4.4 12.4 1.0
C3C A:CLA807 4.4 12.4 1.0
C2C A:CLA807 4.4 12.4 1.0
C3A A:CLA807 4.4 12.4 1.0
C2A A:CLA807 4.5 12.4 1.0
CMA A:CLA806 4.9 14.1 1.0
C15 A:CLA807 4.9 12.4 1.0
CBD A:CLA807 5.0 12.4 1.0
C19 A:CLA807 5.0 12.4 1.0

Magnesium binding site 8 out of 267 in 6pnj

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Magnesium binding site 8 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg808

b:23.0
occ:1.00
MG A:CLA808 0.0 23.0 1.0
ND A:CLA808 2.0 23.0 1.0
NB A:CLA808 2.1 23.0 1.0
NC A:CLA808 2.1 23.0 1.0
NA A:CLA808 2.2 23.0 1.0
C4D A:CLA808 2.9 23.0 1.0
C4B A:CLA808 3.0 23.0 1.0
C1B A:CLA808 3.1 23.0 1.0
C1C A:CLA808 3.1 23.0 1.0
NE2 A:HIS92 3.1 20.6 1.0
C1D A:CLA808 3.1 23.0 1.0
C4A A:CLA808 3.2 23.0 1.0
C4C A:CLA808 3.2 23.0 1.0
C1A A:CLA808 3.2 23.0 1.0
CHC A:CLA808 3.4 23.0 1.0
CHB A:CLA808 3.4 23.0 1.0
CHA A:CLA808 3.5 23.0 1.0
CHD A:CLA808 3.5 23.0 1.0
CE1 A:HIS92 4.0 20.6 1.0
CD2 A:HIS92 4.0 20.6 1.0
C3D A:CLA808 4.1 23.0 1.0
C3B A:CLA808 4.3 23.0 1.0
C2D A:CLA808 4.4 23.0 1.0
C2B A:CLA808 4.4 23.0 1.0
C2C A:CLA808 4.4 23.0 1.0
C3C A:CLA808 4.4 23.0 1.0
C3A A:CLA808 4.5 23.0 1.0
C2A A:CLA808 4.5 23.0 1.0
CBD A:CLA808 5.0 23.0 1.0

Magnesium binding site 9 out of 267 in 6pnj

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Magnesium binding site 9 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg809

b:15.8
occ:1.00
MG A:CLA809 0.0 15.8 1.0
ND A:CLA809 2.0 15.8 1.0
NB A:CLA809 2.1 15.8 1.0
NC A:CLA809 2.1 15.8 1.0
NA A:CLA809 2.2 15.8 1.0
C4D A:CLA809 2.9 15.8 1.0
C4B A:CLA809 3.0 15.8 1.0
C1B A:CLA809 3.1 15.8 1.0
C1C A:CLA809 3.1 15.8 1.0
C1D A:CLA809 3.1 15.8 1.0
C4A A:CLA809 3.1 15.8 1.0
C4C A:CLA809 3.2 15.8 1.0
C1A A:CLA809 3.2 15.8 1.0
CHC A:CLA809 3.4 15.8 1.0
CHB A:CLA809 3.4 15.8 1.0
CHA A:CLA809 3.5 15.8 1.0
CHD A:CLA809 3.5 15.8 1.0
OE1 A:GLN114 3.7 20.8 1.0
CD A:GLN114 3.8 20.8 1.0
NE2 A:GLN114 4.0 20.8 1.0
O2A A:CLA829 4.1 12.2 1.0
C3D A:CLA809 4.1 15.8 1.0
C1 A:CLA829 4.2 12.2 1.0
C2 A:CLA829 4.3 12.2 1.0
C3B A:CLA809 4.3 15.8 1.0
CG A:GLN114 4.3 20.8 1.0
C2D A:CLA809 4.4 15.8 1.0
C2B A:CLA809 4.4 15.8 1.0
C3 A:CLA829 4.4 12.2 1.0
C2C A:CLA809 4.4 15.8 1.0
C3C A:CLA809 4.4 15.8 1.0
C3A A:CLA809 4.5 15.8 1.0
C5 A:CLA829 4.5 12.2 1.0
C2A A:CLA809 4.5 15.8 1.0
CBD A:CLA809 5.0 15.8 1.0

Magnesium binding site 10 out of 267 in 6pnj

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Magnesium binding site 10 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg810

b:24.6
occ:1.00
MG A:CLA810 0.0 24.6 1.0
ND A:CLA810 2.0 24.6 1.0
NB A:CLA810 2.0 24.6 1.0
NC A:CLA810 2.1 24.6 1.0
NA A:CLA810 2.2 24.6 1.0
C4D A:CLA810 2.9 24.6 1.0
C4B A:CLA810 3.0 24.6 1.0
C1B A:CLA810 3.1 24.6 1.0
OE1 A:GLN122 3.1 27.8 1.0
C1C A:CLA810 3.1 24.6 1.0
C1D A:CLA810 3.1 24.6 1.0
C4A A:CLA810 3.1 24.6 1.0
C4C A:CLA810 3.2 24.6 1.0
C1A A:CLA810 3.2 24.6 1.0
CHC A:CLA810 3.4 24.6 1.0
CHB A:CLA810 3.4 24.6 1.0
CHA A:CLA810 3.5 24.6 1.0
CHD A:CLA810 3.5 24.6 1.0
CD A:GLN122 3.6 27.8 1.0
NE2 A:GLN122 3.6 27.8 1.0
C15 A:CLA829 3.7 12.2 1.0
C3D A:CLA810 4.1 24.6 1.0
C13 A:CLA829 4.2 12.2 1.0
C3B A:CLA810 4.3 24.6 1.0
C2D A:CLA810 4.3 24.6 1.0
C2B A:CLA810 4.4 24.6 1.0
C2C A:CLA810 4.4 24.6 1.0
C3C A:CLA810 4.4 24.6 1.0
C3A A:CLA810 4.5 24.6 1.0
C2A A:CLA810 4.5 24.6 1.0
CG A:GLN122 4.9 27.8 1.0
C14 A:CLA829 4.9 12.2 1.0
CBD A:CLA810 4.9 24.6 1.0

Reference:

C.Gisriel, G.Shen, V.Kurashov, M.Y.Ho, S.Zhang, D.Williams, J.H.Golbeck, P.Fromme, D.A.Bryant. The Structure of Photosystem I Acclimated to Far-Red Light Illuminates An Ecologically Important Acclimation Process in Photosynthesis Sci Adv V. 6 Y6415 2020.
ISSN: ESSN 2375-2548
DOI: 10.1126/SCIADV.AAY6415
Page generated: Tue Oct 1 14:13:41 2024

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