Magnesium in PDB 6pnj: Structure of Photosystem I Acclimated to Far-Red Light

All present enzymatic activity of Structure of Photosystem I Acclimated to Far-Red Light:
1.97.1.12;

The structure of Structure of Photosystem I Acclimated to Far-Red Light also contains other interesting chemical elements:

Iron	(Fe)	36 atoms
Calcium	(Ca)	3 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 220; Page 23, Binding sites: 221 - 230; Page 24, Binding sites: 231 - 240; Page 25, Binding sites: 241 - 250; Page 26, Binding sites: 251 - 260; Page 27, Binding sites: 261 - 267;

Binding sites:

The binding sites of Magnesium atom in the Structure of Photosystem I Acclimated to Far-Red Light (pdb code 6pnj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 267 binding sites of Magnesium where determined in the Structure of Photosystem I Acclimated to Far-Red Light, PDB code: 6pnj:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:6.6 occ:1.00 MG A:CL0801 0.0 6.6 1.0 ND A:CL0801 2.0 6.6 1.0 NB A:CL0801 2.1 6.6 1.0 NC A:CL0801 2.1 6.6 1.0 NA A:CL0801 2.2 6.6 1.0 C4D A:CL0801 2.9 6.6 1.0 C4B A:CL0801 3.0 6.6 1.0 NE2 A:HIS713 3.0 8.8 1.0 C1B A:CL0801 3.1 6.6 1.0 C1C A:CL0801 3.1 6.6 1.0 C1D A:CL0801 3.1 6.6 1.0 C4A A:CL0801 3.1 6.6 1.0 C4C A:CL0801 3.1 6.6 1.0 C1A A:CL0801 3.2 6.6 1.0 CHC A:CL0801 3.4 6.6 1.0 CHB A:CL0801 3.4 6.6 1.0 CHA A:CL0801 3.5 6.6 1.0 CHD A:CL0801 3.5 6.6 1.0 CD2 A:HIS713 3.6 8.8 1.0 CAB B:CLA803 3.8 21.2 1.0 C3B B:CLA803 3.9 21.2 1.0 C4B B:CLA803 4.1 21.2 1.0 CHC B:CLA803 4.1 21.2 1.0 C3D A:CL0801 4.1 6.6 1.0 CE1 A:HIS713 4.1 8.8 1.0 C3B A:CL0801 4.3 6.6 1.0 C2D A:CL0801 4.3 6.6 1.0 C2B A:CL0801 4.4 6.6 1.0 C3C A:CL0801 4.4 6.6 1.0 C2C A:CL0801 4.4 6.6 1.0 C3A A:CL0801 4.4 6.6 1.0 C2A A:CL0801 4.5 6.6 1.0 CBB B:CLA803 4.6 21.2 1.0 C2B B:CLA803 4.6 21.2 1.0 NB B:CLA803 4.8 21.2 1.0 C1C B:CLA803 4.9 21.2 1.0 CG A:HIS713 4.9 8.8 1.0 CZ B:PHE627 4.9 11.6 1.0 CBD A:CL0801 5.0 6.6 1.0

Magnesium binding site 2 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:3.9 occ:1.00 MG A:CLA802 0.0 3.9 1.0 ND A:CLA802 2.0 3.9 1.0 NB A:CLA802 2.0 3.9 1.0 NC A:CLA802 2.1 3.9 1.0 NA A:CLA802 2.2 3.9 1.0 C4D A:CLA802 2.9 3.9 1.0 C4B A:CLA802 3.0 3.9 1.0 C1B A:CLA802 3.0 3.9 1.0 C1C A:CLA802 3.1 3.9 1.0 C1D A:CLA802 3.1 3.9 1.0 C4C A:CLA802 3.1 3.9 1.0 C4A A:CLA802 3.1 3.9 1.0 C1A A:CLA802 3.2 3.9 1.0 CHC A:CLA802 3.4 3.9 1.0 CHB A:CLA802 3.4 3.9 1.0 CHA A:CLA802 3.4 3.9 1.0 CHD A:CLA802 3.5 3.9 1.0 CBB B:CLA804 3.6 5.2 1.0 C3D A:CLA802 4.1 3.9 1.0 CB B:ALA665 4.3 5.3 1.0 C3B A:CLA802 4.3 3.9 1.0 C2D A:CLA802 4.3 3.9 1.0 CAB B:CLA804 4.3 5.2 1.0 C2B A:CLA802 4.3 3.9 1.0 OD1 A:ASN637 4.4 9.4 1.0 C2C A:CLA802 4.4 3.9 1.0 C3C A:CLA802 4.4 3.9 1.0 C3A A:CLA802 4.5 3.9 1.0 C2A A:CLA802 4.5 3.9 1.0 CHC B:CLA804 4.8 5.2 1.0 CBD A:CLA802 4.9 3.9 1.0 C3B B:CLA804 5.0 5.2 1.0 C2 A:CL0801 5.0 6.6 1.0

Magnesium binding site 3 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:7.4 occ:1.00 MG A:CLA803 0.0 7.4 1.0 ND A:CLA803 2.0 7.4 1.0 NB A:CLA803 2.0 7.4 1.0 NC A:CLA803 2.1 7.4 1.0 NA A:CLA803 2.2 7.4 1.0 C4D A:CLA803 2.9 7.4 1.0 C1B A:CLA803 3.0 7.4 1.0 C4B A:CLA803 3.0 7.4 1.0 C1D A:CLA803 3.1 7.4 1.0 C1C A:CLA803 3.1 7.4 1.0 C4A A:CLA803 3.1 7.4 1.0 C4C A:CLA803 3.1 7.4 1.0 C1A A:CLA803 3.2 7.4 1.0 CHC A:CLA803 3.4 7.4 1.0 CHB A:CLA803 3.4 7.4 1.0 SD A:MET721 3.4 7.3 1.0 CHD A:CLA803 3.5 7.4 1.0 CZ2 B:TRP589 3.5 4.5 1.0 CHA A:CLA803 3.5 7.4 1.0 NE1 B:TRP589 3.8 4.5 1.0 CE2 B:TRP589 4.0 4.5 1.0 CG A:MET721 4.0 7.3 1.0 C3D A:CLA803 4.2 7.4 1.0 C2D A:CLA803 4.3 7.4 1.0 C3B A:CLA803 4.3 7.4 1.0 CB A:MET721 4.3 7.3 1.0 C2B A:CLA803 4.3 7.4 1.0 C2C A:CLA803 4.4 7.4 1.0 C3C A:CLA803 4.4 7.4 1.0 C3A A:CLA803 4.4 7.4 1.0 CE A:MET721 4.4 7.3 1.0 C2A A:CLA803 4.5 7.4 1.0 CH2 B:TRP589 4.6 4.5 1.0 CBD A:CLA803 5.0 7.4 1.0 CMC A:CLA850 5.0 8.9 1.0

Magnesium binding site 4 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:29.6 occ:1.00 MG A:CLA804 0.0 29.6 1.0 ND A:CLA804 2.0 29.6 1.0 NB A:CLA804 2.1 29.6 1.0 NC A:CLA804 2.1 29.6 1.0 NA A:CLA804 2.2 29.6 1.0 C4D A:CLA804 2.9 29.6 1.0 C4B A:CLA804 3.0 29.6 1.0 C1B A:CLA804 3.1 29.6 1.0 C1C A:CLA804 3.1 29.6 1.0 C1D A:CLA804 3.1 29.6 1.0 NE2 A:HIS51 3.1 17.6 1.0 C4A A:CLA804 3.1 29.6 1.0 C4C A:CLA804 3.2 29.6 1.0 C1A A:CLA804 3.2 29.6 1.0 CHC A:CLA804 3.4 29.6 1.0 CHB A:CLA804 3.4 29.6 1.0 CHA A:CLA804 3.5 29.6 1.0 CHD A:CLA804 3.5 29.6 1.0 CB J:PRO14 3.6 35.8 1.0 CG J:PRO14 3.8 35.8 1.0 CE1 A:HIS51 3.9 17.6 1.0 CD2 A:HIS51 4.0 17.6 1.0 C3D A:CLA804 4.1 29.6 1.0 C3B A:CLA804 4.3 29.6 1.0 C2D A:CLA804 4.4 29.6 1.0 C2B A:CLA804 4.4 29.6 1.0 C2C A:CLA804 4.4 29.6 1.0 C3C A:CLA804 4.4 29.6 1.0 C39 J:BCR102 4.5 45.9 1.0 C3A A:CLA804 4.5 29.6 1.0 C2A A:CLA804 4.5 29.6 1.0 C29 J:BCR102 4.7 45.9 1.0 CD J:PRO14 4.8 35.8 1.0 ND1 A:HIS51 4.9 17.6 1.0 CBD A:CLA804 5.0 29.6 1.0

Magnesium binding site 5 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg805 b:21.9 occ:1.00 MG A:CLA805 0.0 21.9 1.0 ND A:CLA805 2.0 21.9 1.0 NB A:CLA805 2.1 21.9 1.0 NC A:CLA805 2.1 21.9 1.0 NA A:CLA805 2.2 21.9 1.0 C4D A:CLA805 2.9 21.9 1.0 NE2 A:HIS55 3.0 16.8 1.0 C4B A:CLA805 3.0 21.9 1.0 C1B A:CLA805 3.1 21.9 1.0 C1C A:CLA805 3.1 21.9 1.0 C1D A:CLA805 3.1 21.9 1.0 C4A A:CLA805 3.1 21.9 1.0 C4C A:CLA805 3.2 21.9 1.0 C1A A:CLA805 3.2 21.9 1.0 CHC A:CLA805 3.4 21.9 1.0 CHB A:CLA805 3.4 21.9 1.0 CHA A:CLA805 3.5 21.9 1.0 CHD A:CLA805 3.5 21.9 1.0 C4 A:CLA805 3.5 21.9 1.0 CE1 A:HIS55 3.9 16.8 1.0 CD2 A:HIS55 4.0 16.8 1.0 C3D A:CLA805 4.1 21.9 1.0 C3B A:CLA805 4.3 21.9 1.0 C2D A:CLA805 4.3 21.9 1.0 C3 A:CLA805 4.4 21.9 1.0 C2B A:CLA805 4.4 21.9 1.0 C2C A:CLA805 4.4 21.9 1.0 C3C A:CLA805 4.4 21.9 1.0 C3A A:CLA805 4.5 21.9 1.0 C2A A:CLA805 4.5 21.9 1.0 C6 A:CLA805 4.7 21.9 1.0 C7 A:CLA805 4.8 21.9 1.0 C2 A:CLA805 4.9 21.9 1.0 CBD A:CLA805 4.9 21.9 1.0

Magnesium binding site 6 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg806 b:14.1 occ:1.00 MG A:CLA806 0.0 14.1 1.0 ND A:CLA806 2.0 14.1 1.0 NB A:CLA806 2.1 14.1 1.0 NC A:CLA806 2.1 14.1 1.0 NA A:CLA806 2.2 14.1 1.0 C4D A:CLA806 2.9 14.1 1.0 C4B A:CLA806 3.0 14.1 1.0 NE2 A:HIS75 3.0 12.3 1.0 C1C A:CLA806 3.1 14.1 1.0 C1B A:CLA806 3.1 14.1 1.0 C1D A:CLA806 3.1 14.1 1.0 C4A A:CLA806 3.1 14.1 1.0 C4C A:CLA806 3.1 14.1 1.0 C1A A:CLA806 3.2 14.1 1.0 CMB A:CLA831 3.3 12.2 1.0 CHC A:CLA806 3.4 14.1 1.0 CHB A:CLA806 3.4 14.1 1.0 CHA A:CLA806 3.5 14.1 1.0 CD2 A:HIS75 3.5 12.3 1.0 CHD A:CLA806 3.6 14.1 1.0 CE1 A:HIS75 4.1 12.3 1.0 C3D A:CLA806 4.1 14.1 1.0 C3B A:CLA806 4.3 14.1 1.0 C2D A:CLA806 4.4 14.1 1.0 C2C A:CLA806 4.4 14.1 1.0 C2B A:CLA806 4.4 14.1 1.0 C3C A:CLA806 4.4 14.1 1.0 C3A A:CLA806 4.4 14.1 1.0 CBB A:CLA831 4.5 12.2 1.0 C2A A:CLA806 4.5 14.1 1.0 C2B A:CLA831 4.6 12.2 1.0 CG2 A:ILE71 4.7 17.4 1.0 CG A:HIS75 4.7 12.3 1.0 CBD A:CLA806 4.9 14.1 1.0 ND1 A:HIS75 5.0 12.3 1.0

Magnesium binding site 7 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg807 b:12.4 occ:1.00 MG A:CLA807 0.0 12.4 1.0 ND A:CLA807 2.0 12.4 1.0 NB A:CLA807 2.1 12.4 1.0 NC A:CLA807 2.1 12.4 1.0 NA A:CLA807 2.2 12.4 1.0 C4D A:CLA807 2.9 12.4 1.0 C4B A:CLA807 3.0 12.4 1.0 NE2 A:HIS78 3.0 11.4 1.0 C1B A:CLA807 3.1 12.4 1.0 C1C A:CLA807 3.1 12.4 1.0 C1D A:CLA807 3.1 12.4 1.0 C4A A:CLA807 3.1 12.4 1.0 C4C A:CLA807 3.1 12.4 1.0 C1A A:CLA807 3.2 12.4 1.0 CHC A:CLA807 3.4 12.4 1.0 CHB A:CLA807 3.4 12.4 1.0 CHA A:CLA807 3.5 12.4 1.0 CHD A:CLA807 3.5 12.4 1.0 C16 A:CLA807 3.6 12.4 1.0 CD2 A:HIS78 3.9 11.4 1.0 CE1 A:HIS78 4.0 11.4 1.0 C17 A:CLA807 4.1 12.4 1.0 C3D A:CLA807 4.1 12.4 1.0 C18 A:CLA807 4.2 12.4 1.0 C3B A:CLA807 4.3 12.4 1.0 C2D A:CLA807 4.4 12.4 1.0 C2B A:CLA807 4.4 12.4 1.0 C3C A:CLA807 4.4 12.4 1.0 C2C A:CLA807 4.4 12.4 1.0 C3A A:CLA807 4.4 12.4 1.0 C2A A:CLA807 4.5 12.4 1.0 CMA A:CLA806 4.9 14.1 1.0 C15 A:CLA807 4.9 12.4 1.0 CBD A:CLA807 5.0 12.4 1.0 C19 A:CLA807 5.0 12.4 1.0

Magnesium binding site 8 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg808 b:23.0 occ:1.00 MG A:CLA808 0.0 23.0 1.0 ND A:CLA808 2.0 23.0 1.0 NB A:CLA808 2.1 23.0 1.0 NC A:CLA808 2.1 23.0 1.0 NA A:CLA808 2.2 23.0 1.0 C4D A:CLA808 2.9 23.0 1.0 C4B A:CLA808 3.0 23.0 1.0 C1B A:CLA808 3.1 23.0 1.0 C1C A:CLA808 3.1 23.0 1.0 NE2 A:HIS92 3.1 20.6 1.0 C1D A:CLA808 3.1 23.0 1.0 C4A A:CLA808 3.2 23.0 1.0 C4C A:CLA808 3.2 23.0 1.0 C1A A:CLA808 3.2 23.0 1.0 CHC A:CLA808 3.4 23.0 1.0 CHB A:CLA808 3.4 23.0 1.0 CHA A:CLA808 3.5 23.0 1.0 CHD A:CLA808 3.5 23.0 1.0 CE1 A:HIS92 4.0 20.6 1.0 CD2 A:HIS92 4.0 20.6 1.0 C3D A:CLA808 4.1 23.0 1.0 C3B A:CLA808 4.3 23.0 1.0 C2D A:CLA808 4.4 23.0 1.0 C2B A:CLA808 4.4 23.0 1.0 C2C A:CLA808 4.4 23.0 1.0 C3C A:CLA808 4.4 23.0 1.0 C3A A:CLA808 4.5 23.0 1.0 C2A A:CLA808 4.5 23.0 1.0 CBD A:CLA808 5.0 23.0 1.0

Magnesium binding site 9 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg809 b:15.8 occ:1.00 MG A:CLA809 0.0 15.8 1.0 ND A:CLA809 2.0 15.8 1.0 NB A:CLA809 2.1 15.8 1.0 NC A:CLA809 2.1 15.8 1.0 NA A:CLA809 2.2 15.8 1.0 C4D A:CLA809 2.9 15.8 1.0 C4B A:CLA809 3.0 15.8 1.0 C1B A:CLA809 3.1 15.8 1.0 C1C A:CLA809 3.1 15.8 1.0 C1D A:CLA809 3.1 15.8 1.0 C4A A:CLA809 3.1 15.8 1.0 C4C A:CLA809 3.2 15.8 1.0 C1A A:CLA809 3.2 15.8 1.0 CHC A:CLA809 3.4 15.8 1.0 CHB A:CLA809 3.4 15.8 1.0 CHA A:CLA809 3.5 15.8 1.0 CHD A:CLA809 3.5 15.8 1.0 OE1 A:GLN114 3.7 20.8 1.0 CD A:GLN114 3.8 20.8 1.0 NE2 A:GLN114 4.0 20.8 1.0 O2A A:CLA829 4.1 12.2 1.0 C3D A:CLA809 4.1 15.8 1.0 C1 A:CLA829 4.2 12.2 1.0 C2 A:CLA829 4.3 12.2 1.0 C3B A:CLA809 4.3 15.8 1.0 CG A:GLN114 4.3 20.8 1.0 C2D A:CLA809 4.4 15.8 1.0 C2B A:CLA809 4.4 15.8 1.0 C3 A:CLA829 4.4 12.2 1.0 C2C A:CLA809 4.4 15.8 1.0 C3C A:CLA809 4.4 15.8 1.0 C3A A:CLA809 4.5 15.8 1.0 C5 A:CLA829 4.5 12.2 1.0 C2A A:CLA809 4.5 15.8 1.0 CBD A:CLA809 5.0 15.8 1.0

Magnesium binding site 10 out of 267 in the Structure of Photosystem I Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Photosystem I Acclimated to Far-Red Light within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg810 b:24.6 occ:1.00 MG A:CLA810 0.0 24.6 1.0 ND A:CLA810 2.0 24.6 1.0 NB A:CLA810 2.0 24.6 1.0 NC A:CLA810 2.1 24.6 1.0 NA A:CLA810 2.2 24.6 1.0 C4D A:CLA810 2.9 24.6 1.0 C4B A:CLA810 3.0 24.6 1.0 C1B A:CLA810 3.1 24.6 1.0 OE1 A:GLN122 3.1 27.8 1.0 C1C A:CLA810 3.1 24.6 1.0 C1D A:CLA810 3.1 24.6 1.0 C4A A:CLA810 3.1 24.6 1.0 C4C A:CLA810 3.2 24.6 1.0 C1A A:CLA810 3.2 24.6 1.0 CHC A:CLA810 3.4 24.6 1.0 CHB A:CLA810 3.4 24.6 1.0 CHA A:CLA810 3.5 24.6 1.0 CHD A:CLA810 3.5 24.6 1.0 CD A:GLN122 3.6 27.8 1.0 NE2 A:GLN122 3.6 27.8 1.0 C15 A:CLA829 3.7 12.2 1.0 C3D A:CLA810 4.1 24.6 1.0 C13 A:CLA829 4.2 12.2 1.0 C3B A:CLA810 4.3 24.6 1.0 C2D A:CLA810 4.3 24.6 1.0 C2B A:CLA810 4.4 24.6 1.0 C2C A:CLA810 4.4 24.6 1.0 C3C A:CLA810 4.4 24.6 1.0 C3A A:CLA810 4.5 24.6 1.0 C2A A:CLA810 4.5 24.6 1.0 CG A:GLN122 4.9 27.8 1.0 C14 A:CLA829 4.9 12.2 1.0 CBD A:CLA810 4.9 24.6 1.0

C.Gisriel, G.Shen, V.Kurashov, M.Y.Ho, S.Zhang, D.Williams, J.H.Golbeck, P.Fromme, D.A.Bryant. The Structure of Photosystem I Acclimated to Far-Red Light Illuminates An Ecologically Important Acclimation Process in Photosynthesis Sci Adv V. 6 Y6415 2020.
ISSN: ESSN 2375-2548
DOI: 10.1126/SCIADV.AAY6415