Magnesium in PDB 6pqr: Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc)

The structure of Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc) also contains other interesting chemical elements:

Potassium	(K)	2 atoms
Zinc	(Zn)	2 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc) (pdb code 6pqr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc), PDB code: 6pqr:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:74.8 occ:1.00 OD1 A:ASP125 2.1 70.3 1.0 OD2 A:ASP224 2.1 81.5 1.0 CG A:ASP224 3.0 81.5 1.0 CG A:ASP125 3.0 70.3 1.0 CB A:ASP224 3.2 81.5 1.0 OD2 A:ASP125 3.5 70.3 1.0 O A:GLY126 4.1 73.1 1.0 OD1 A:ASP224 4.2 81.5 1.0 CB A:ASP125 4.2 70.3 1.0 N A:GLY126 4.3 73.1 1.0 CG A:LYS226 4.5 85.0 1.0 CA A:ASP125 4.6 70.3 1.0 OE1 A:GLU185 4.6 83.5 1.0 CD1 A:ILE227 4.7 81.9 1.0 CA A:ASP224 4.8 81.5 1.0 CD A:LYS226 4.8 85.0 1.0 C A:ASP125 4.9 70.3 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:73.2 occ:1.00 OD1 D:ASP125 2.1 69.7 1.0 OD2 D:ASP224 2.1 81.2 1.0 CG D:ASP224 3.0 81.2 1.0 CG D:ASP125 3.0 69.7 1.0 CB D:ASP224 3.2 81.2 1.0 OD2 D:ASP125 3.5 69.7 1.0 O D:GLY126 4.1 72.8 1.0 OD1 D:ASP224 4.2 81.2 1.0 CB D:ASP125 4.2 69.7 1.0 N D:GLY126 4.3 72.8 1.0 CG D:LYS226 4.5 85.2 1.0 CA D:ASP125 4.6 69.7 1.0 OE1 D:GLU185 4.6 83.7 1.0 CD1 D:ILE227 4.7 82.2 1.0 CA D:ASP224 4.8 81.2 1.0 CD D:LYS226 4.8 85.2 1.0 C D:ASP125 4.9 69.7 1.0

C.Liu, Y.Yang, D.G.Schatz. Structures of A Rag-Like Transposase During Cut-and-Paste Transposition. Nature V. 575 540 2019.
ISSN: ESSN 1476-4687
PubMed: 31723264
DOI: 10.1038/S41586-019-1753-7