Magnesium in PDB 6pqu: Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc)

The structure of Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc) also contains other interesting chemical elements:

Potassium	(K)	2 atoms
Zinc	(Zn)	2 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc) (pdb code 6pqu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc), PDB code: 6pqu:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:54.8 occ:1.00 OD2 A:ASP224 2.0 56.9 1.0 OD1 A:ASP125 2.0 46.6 1.0 CG A:ASP224 2.8 56.9 1.0 CB A:ASP224 3.0 56.9 1.0 CG A:ASP125 3.1 46.6 1.0 OD2 A:ASP125 3.5 46.6 1.0 OD1 A:ASP224 4.0 56.9 1.0 CD1 A:ILE227 4.1 58.3 1.0 O A:GLY126 4.2 50.0 1.0 CB A:LYS226 4.3 61.9 1.0 CG1 A:ILE227 4.4 58.3 1.0 OE1 A:GLU185 4.4 58.5 1.0 CB A:ASP125 4.4 46.6 1.0 CE A:LYS226 4.5 61.9 1.0 CA A:ASP224 4.5 56.9 1.0 OP2 D:DG18 4.8 0.6 1.0 N A:LYS226 4.8 61.9 1.0 N A:GLY126 4.8 50.0 1.0 NZ A:LYS226 5.0 61.9 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:55.9 occ:1.00 OD1 E:ASP125 2.0 46.9 1.0 OD2 E:ASP224 2.0 57.2 1.0 CG E:ASP125 2.9 46.9 1.0 CG E:ASP224 3.0 57.2 1.0 OD2 E:ASP125 3.2 46.9 1.0 CB E:ASP224 3.3 57.2 1.0 O E:GLY126 3.8 50.0 1.0 OD1 E:ASP224 4.1 57.2 1.0 CB E:ASP125 4.3 46.9 1.0 CD1 E:ILE227 4.4 59.1 1.0 OE1 E:GLU185 4.4 58.9 1.0 CB E:LYS226 4.6 62.6 1.0 CE E:LYS226 4.6 62.6 1.0 OP2 H:DG18 4.6 1.0 1.0 CG1 E:ILE227 4.7 59.1 1.0 N E:GLY126 4.7 50.0 1.0 CA E:ASP224 4.8 57.2 1.0 C E:GLY126 4.9 50.0 1.0 CA E:ASP125 4.9 46.9 1.0 NZ E:LYS226 5.0 62.6 1.0

C.Liu, Y.Yang, D.G.Schatz. Structures of A Rag-Like Transposase During Cut-and-Paste Transposition. Nature V. 575 540 2019.
ISSN: ESSN 1476-4687
PubMed: 31723264
DOI: 10.1038/S41586-019-1753-7