Magnesium in PDB 6pqu: Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc)

Other elements in 6pqu:

The structure of Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc) also contains other interesting chemical elements:

Potassium (K) 2 atoms
Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc) (pdb code 6pqu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc), PDB code: 6pqu:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6pqu

Go back to Magnesium Binding Sites List in 6pqu
Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:54.8
occ:1.00
OD2 A:ASP224 2.0 56.9 1.0
OD1 A:ASP125 2.0 46.6 1.0
CG A:ASP224 2.8 56.9 1.0
CB A:ASP224 3.0 56.9 1.0
CG A:ASP125 3.1 46.6 1.0
OD2 A:ASP125 3.5 46.6 1.0
OD1 A:ASP224 4.0 56.9 1.0
CD1 A:ILE227 4.1 58.3 1.0
O A:GLY126 4.2 50.0 1.0
CB A:LYS226 4.3 61.9 1.0
CG1 A:ILE227 4.4 58.3 1.0
OE1 A:GLU185 4.4 58.5 1.0
CB A:ASP125 4.4 46.6 1.0
CE A:LYS226 4.5 61.9 1.0
CA A:ASP224 4.5 56.9 1.0
OP2 D:DG18 4.8 0.6 1.0
N A:LYS226 4.8 61.9 1.0
N A:GLY126 4.8 50.0 1.0
NZ A:LYS226 5.0 61.9 1.0

Magnesium binding site 2 out of 2 in 6pqu

Go back to Magnesium Binding Sites List in 6pqu
Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Hztransib/Nicked Tir Substrate Dna Pre-Reaction Complex (Prc) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg601

b:55.9
occ:1.00
OD1 E:ASP125 2.0 46.9 1.0
OD2 E:ASP224 2.0 57.2 1.0
CG E:ASP125 2.9 46.9 1.0
CG E:ASP224 3.0 57.2 1.0
OD2 E:ASP125 3.2 46.9 1.0
CB E:ASP224 3.3 57.2 1.0
O E:GLY126 3.8 50.0 1.0
OD1 E:ASP224 4.1 57.2 1.0
CB E:ASP125 4.3 46.9 1.0
CD1 E:ILE227 4.4 59.1 1.0
OE1 E:GLU185 4.4 58.9 1.0
CB E:LYS226 4.6 62.6 1.0
CE E:LYS226 4.6 62.6 1.0
OP2 H:DG18 4.6 1.0 1.0
CG1 E:ILE227 4.7 59.1 1.0
N E:GLY126 4.7 50.0 1.0
CA E:ASP224 4.8 57.2 1.0
C E:GLY126 4.9 50.0 1.0
CA E:ASP125 4.9 46.9 1.0
NZ E:LYS226 5.0 62.6 1.0

Reference:

C.Liu, Y.Yang, D.G.Schatz. Structures of A Rag-Like Transposase During Cut-and-Paste Transposition. Nature V. 575 540 2019.
ISSN: ESSN 1476-4687
PubMed: 31723264
DOI: 10.1038/S41586-019-1753-7
Page generated: Mon Dec 14 23:49:45 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy