Magnesium in PDB 6ptw: uc(Nmr) Data-Driven Model of Kras-Gmppnp:Rbd-Crd Complex Tethered to A Nanodisc (State B)

The structure of uc(Nmr) Data-Driven Model of Kras-Gmppnp:Rbd-Crd Complex Tethered to A Nanodisc (State B) also contains other interesting chemical elements:

Zinc

(Zn)

20 atoms

The binding sites of Magnesium atom in the uc(Nmr) Data-Driven Model of Kras-Gmppnp:Rbd-Crd Complex Tethered to A Nanodisc (State B) (pdb code 6ptw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the uc(Nmr) Data-Driven Model of Kras-Gmppnp:Rbd-Crd Complex Tethered to A Nanodisc (State B), PDB code: 6ptw:

Magnesium binding site 1 out of 1 in the uc(Nmr) Data-Driven Model of Kras-Gmppnp:Rbd-Crd Complex Tethered to A Nanodisc (State B)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of uc(Nmr) Data-Driven Model of Kras-Gmppnp:Rbd-Crd Complex Tethered to A Nanodisc (State B) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg206 b:10.0 occ:1.00 O2G B:GNP205 1.3 10.0 1.0 OG1 B:THR35 1.7 10.0 1.0 OG B:SER17 1.7 10.0 1.0 HG1 B:THR35 2.4 10.0 1.0 HG B:SER17 2.4 10.0 1.0 CB B:SER17 2.7 10.0 1.0 CB B:THR35 2.7 10.0 1.0 PG B:GNP205 2.9 10.0 1.0 H B:THR35 3.2 10.0 1.0 HNB3 B:GNP205 3.5 10.0 1.0 O1B B:GNP205 3.5 10.0 1.0 O B:ASP33 3.5 10.0 1.0 H B:SER17 3.5 10.0 1.0 O3G B:GNP205 3.6 10.0 1.0 N B:THR35 3.6 10.0 1.0 N3B B:GNP205 3.6 10.0 1.0 O2A B:GNP205 3.7 10.0 1.0 HZ1 B:LYS16 3.7 10.0 1.0 CG2 B:THR35 3.8 10.0 1.0 O1G B:GNP205 3.8 10.0 1.0 CA B:THR35 3.8 10.0 1.0 OD1 B:ASP57 3.8 10.0 1.0 CA B:SER17 4.0 10.0 1.0 N B:SER17 4.1 10.0 1.0 PB B:GNP205 4.2 10.0 1.0 PA B:GNP205 4.4 10.0 1.0 O1A B:GNP205 4.4 10.0 1.0 HZ3 B:LYS16 4.5 10.0 1.0 NZ B:LYS16 4.5 10.0 1.0 C B:PRO34 4.6 10.0 1.0 HZ2 B:LYS16 4.7 10.0 1.0 C B:ASP33 4.7 10.0 1.0 O3A B:GNP205 4.8 10.0 1.0 HH B:TYR32 4.9 10.0 1.0 CG B:ASP57 4.9 10.0 1.0 C B:THR35 4.9 10.0 1.0

Z.Fang, K.Lee, K.Huo, G.Gasmi-Seabrook, L.Zheng, N.Moghal, M.Tsao, M.Ikura, C.B.Marshall. Multivalent Assembly of Kras with the Ras-Binding and Cysteine-Rich Domains of Craf on the Membrane Proc.Natl.Acad.Sci.Usa 2020.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.1914076117