Atomistry » Magnesium » PDB 6psr-6q70 » 6ptz
Atomistry »
  Magnesium »
    PDB 6psr-6q70 »
      6ptz »

Magnesium in PDB 6ptz: Crystal Structure of Pigeon Cryptochrome 4 Mutant Y319D in Complex with Flavin Adenine Dinucleotide

Protein crystallography data

The structure of Crystal Structure of Pigeon Cryptochrome 4 Mutant Y319D in Complex with Flavin Adenine Dinucleotide, PDB code: 6ptz was solved by B.D.Zoltowski, Y.Chelliah, A.C.Wickramaratne, L.Jarocha, N.Karki, H.Mouritsen, P.J.Hore, R.E.Hibbs, C.B.Green, J.S.Takahashi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.21 / 1.79
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.733, 85.574, 103.283, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 20.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Pigeon Cryptochrome 4 Mutant Y319D in Complex with Flavin Adenine Dinucleotide (pdb code 6ptz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Pigeon Cryptochrome 4 Mutant Y319D in Complex with Flavin Adenine Dinucleotide, PDB code: 6ptz:

Magnesium binding site 1 out of 1 in 6ptz

Go back to Magnesium Binding Sites List in 6ptz
Magnesium binding site 1 out of 1 in the Crystal Structure of Pigeon Cryptochrome 4 Mutant Y319D in Complex with Flavin Adenine Dinucleotide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pigeon Cryptochrome 4 Mutant Y319D in Complex with Flavin Adenine Dinucleotide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:45.0
occ:1.00
O A:HOH851 2.0 53.0 1.0
O1A A:FAD501 2.6 11.6 1.0
O A:HOH935 3.1 37.3 1.0
CG2 A:THR246 3.6 25.9 1.0
PA A:FAD501 3.6 12.0 1.0
NE2 A:GLN287 3.8 14.7 1.0
O2A A:FAD501 3.8 11.9 1.0
CD1 A:LEU284 3.8 31.9 1.0
CB A:THR246 3.9 26.9 1.0
O A:HOH910 4.0 58.7 1.0
CG A:GLN287 4.0 12.4 1.0
CD A:GLN287 4.2 18.4 1.0
O A:HOH774 4.3 12.8 1.0
O A:HOH968 4.3 35.2 1.0
CA A:THR246 4.3 26.5 1.0
O5B A:FAD501 4.5 11.4 1.0
O3P A:FAD501 4.9 12.6 1.0
N A:THR247 4.9 16.6 1.0
O A:HOH776 5.0 41.8 1.0

Reference:

B.D.Zoltowski, Y.Chelliah, A.Wickramaratne, L.Jarocha, N.Karki, W.Xu, H.Mouritsen, P.J.Hore, R.E.Hibbs, C.B.Green, J.S.Takahashi. Chemical and Structural Analysis of A Photoactive Vertebrate Cryptochrome From Pigeon. Proc.Natl.Acad.Sci.Usa V. 116 19449 2019.
ISSN: ESSN 1091-6490
PubMed: 31484780
DOI: 10.1073/PNAS.1907875116
Page generated: Tue Oct 1 15:18:44 2024

Last articles

Cl in 2QVX
Cl in 2QU7
Cl in 2QU6
Cl in 2QTS
Cl in 2QT6
Cl in 2QU5
Cl in 2QU3
Cl in 2QRB
Cl in 2QSQ
Cl in 2QSZ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy