Magnesium in PDB 6pwj: Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Apo)

The structure of Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Apo), PDB code: 6pwj was solved by K.M.Giglio, R.B.Cooley, H.Sondermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	12.69 / 2.70
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	129.830, 129.830, 114.441, 90.00, 90.00, 120.00
R / Rfree (%)	19.9 / 24.3

The binding sites of Magnesium atom in the Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Apo) (pdb code 6pwj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Apo), PDB code: 6pwj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Apo)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Apo) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1000 b:53.1 occ:1.00 OE2 A:GLU438 2.0 55.2 1.0 O A:HOH1105 2.0 58.5 1.0 O A:HOH1102 2.1 52.0 1.0 OE1 A:GLU524 2.1 46.5 1.0 OD1 A:ASN492 2.1 54.5 1.0 OD2 A:ASP554 2.1 58.5 1.0 CG A:ASN492 3.0 33.3 1.0 CD A:GLU438 3.0 42.7 1.0 CG A:ASP554 3.1 47.1 1.0 ND2 A:ASN492 3.2 29.2 1.0 CD A:GLU524 3.3 34.9 1.0 OD1 A:ASP554 3.5 50.0 1.0 OE1 A:GLU438 3.6 49.3 1.0 CG A:GLU524 4.0 37.2 1.0 CG A:GLU438 4.2 36.6 1.0 OE2 A:GLU524 4.2 48.4 1.0 CB A:ASP554 4.3 43.1 1.0 CB A:ASN492 4.3 30.3 1.0 CD A:LYS575 4.5 33.1 1.0 CB A:GLU524 4.6 39.7 1.0 CE A:LYS575 4.9 41.2 1.0

Magnesium binding site 2 out of 2 in the Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Apo)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Apo) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg701 b:31.9 occ:1.00 OD1 B:ASN492 2.0 52.3 1.0 OD2 B:ASP554 2.0 60.7 1.0 O B:HOH805 2.1 37.9 1.0 OE2 B:GLU438 2.1 57.1 1.0 O B:HOH802 2.2 32.6 1.0 OE1 B:GLU524 2.2 37.5 1.0 CG B:ASN492 2.9 42.4 1.0 CG B:ASP554 3.1 50.7 1.0 ND2 B:ASN492 3.2 39.9 1.0 CD B:GLU438 3.3 41.7 1.0 CD B:GLU524 3.4 35.2 1.0 OD1 B:ASP554 3.6 55.9 1.0 OE1 B:GLU438 3.8 54.9 1.0 CG B:GLU524 4.1 41.6 1.0 CB B:ASN492 4.3 39.3 1.0 CB B:ASP554 4.3 37.1 1.0 CG B:GLU438 4.4 50.5 1.0 OE2 B:GLU524 4.4 41.0 1.0 CD B:LYS575 4.7 45.7 1.0 CB B:GLU524 4.7 49.3 1.0

K.M.Giglio, R.B.Cooley, H.Sondermann. Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Apo) To Be Published.