Magnesium in PDB 6pwk: Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Bound to C-Di-Gmp)

The structure of Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Bound to C-Di-Gmp), PDB code: 6pwk was solved by K.M.Giglio, R.B.Cooley, H.Sondermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.77 / 2.61
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	77.379, 90.221, 82.750, 90.00, 115.49, 90.00
R / Rfree (%)	19.7 / 24.9

The binding sites of Magnesium atom in the Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Bound to C-Di-Gmp) (pdb code 6pwk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Bound to C-Di-Gmp), PDB code: 6pwk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Bound to C-Di-Gmp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Bound to C-Di-Gmp) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg703 b:45.0 occ:1.00 O2P A:C2E701 2.1 58.7 1.0 OE1 A:GLU524 2.2 64.7 1.0 OD2 A:ASP554 2.3 78.5 1.0 OE2 A:GLU438 2.3 59.8 1.0 OD1 A:ASN492 2.3 66.3 1.0 OD1 A:ASP554 2.4 74.3 1.0 CG A:ASP554 2.6 73.8 1.0 CD A:GLU524 3.3 65.1 1.0 CD A:GLU438 3.4 60.5 1.0 CG A:ASN492 3.4 57.6 1.0 P1 A:C2E701 3.6 82.0 1.0 CG A:GLU524 3.8 66.0 1.0 OE1 A:GLU438 3.9 63.3 1.0 O A:HOH803 3.9 76.1 1.0 ND2 A:ASN492 3.9 54.1 1.0 CB A:ASP554 4.1 69.5 1.0 O1P A:C2E701 4.2 47.1 1.0 O5' A:C2E701 4.2 75.9 1.0 OE2 A:GLU524 4.4 58.5 1.0 CB A:GLU524 4.5 51.7 1.0 CG A:GLU438 4.6 44.7 1.0 CB A:ASN492 4.7 50.4 1.0 O3A A:C2E701 4.8 73.5 1.0 CD A:LYS575 4.8 52.8 1.0 CA A:ASP554 4.9 73.0 1.0 C2A A:C2E701 5.0 59.7 1.0

Magnesium binding site 2 out of 2 in the Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Bound to C-Di-Gmp)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Bound to C-Di-Gmp) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg703 b:43.1 occ:1.00 OD1 B:ASN492 2.1 67.7 1.0 O2P B:C2E701 2.1 53.5 1.0 OE2 B:GLU438 2.1 61.0 1.0 O B:HOH804 2.2 55.7 1.0 OD2 B:ASP554 2.3 76.3 1.0 OE1 B:GLU524 2.3 59.0 1.0 CG B:ASN492 3.1 52.6 1.0 CG B:ASP554 3.1 71.1 1.0 CD B:GLU438 3.2 53.5 1.0 CD B:GLU524 3.4 60.5 1.0 OD1 B:ASP554 3.4 79.2 1.0 ND2 B:ASN492 3.5 57.1 1.0 P1 B:C2E701 3.6 45.3 1.0 OE1 B:GLU438 3.8 59.3 1.0 CG B:GLU524 3.9 60.9 1.0 O1P B:C2E701 4.1 54.5 1.0 O5' B:C2E701 4.2 55.6 1.0 CG B:GLU438 4.3 53.0 1.0 CB B:ASP554 4.4 56.6 1.0 CB B:ASN492 4.4 44.0 1.0 OE2 B:GLU524 4.5 61.3 1.0 CB B:GLU524 4.5 53.3 1.0 O3A B:C2E701 4.7 48.5 1.0 O2A B:C2E701 4.8 53.4 1.0 CD B:LYS575 4.8 43.2 1.0 C2A B:C2E701 4.8 55.3 1.0

K.M.Giglio, R.B.Cooley, H.Sondermann. Vibrio Cholerae Lapd S Helix-Ggdef-Eal (Bound to C-Di-Gmp) To Be Published.