Magnesium in PDB 6q2l: The Structure of the Streptococcus Gordonii Surface Protein Sspb in Complex with Tev Peptide Provides Clues to the Adherence of Oral Streptococcal Adherence to Salivary Agglutinin

Protein crystallography data

The structure of The Structure of the Streptococcus Gordonii Surface Protein Sspb in Complex with Tev Peptide Provides Clues to the Adherence of Oral Streptococcal Adherence to Salivary Agglutinin, PDB code: 6q2l was solved by N.Schormann, C.Deivanayagam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.15 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.223, 47.695, 64.652, 90.00, 113.60, 90.00
R / Rfree (%) 19.5 / 23.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of the Streptococcus Gordonii Surface Protein Sspb in Complex with Tev Peptide Provides Clues to the Adherence of Oral Streptococcal Adherence to Salivary Agglutinin (pdb code 6q2l). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Structure of the Streptococcus Gordonii Surface Protein Sspb in Complex with Tev Peptide Provides Clues to the Adherence of Oral Streptococcal Adherence to Salivary Agglutinin, PDB code: 6q2l:

Magnesium binding site 1 out of 1 in 6q2l

Go back to Magnesium Binding Sites List in 6q2l
Magnesium binding site 1 out of 1 in the The Structure of the Streptococcus Gordonii Surface Protein Sspb in Complex with Tev Peptide Provides Clues to the Adherence of Oral Streptococcal Adherence to Salivary Agglutinin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of the Streptococcus Gordonii Surface Protein Sspb in Complex with Tev Peptide Provides Clues to the Adherence of Oral Streptococcal Adherence to Salivary Agglutinin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:13.5
occ:1.00
OG A:SER648 2.2 14.6 1.0
O A:HOH901 2.2 29.9 1.0
O A:SER648 2.2 13.9 1.0
OD1 A:ASN650 2.3 14.6 1.0
OE1 A:GLU664 2.3 15.6 1.0
O A:HOH1147 3.0 43.0 1.0
O A:HOH1034 3.1 28.0 1.0
CB A:SER648 3.1 13.9 1.0
C A:SER648 3.2 13.2 1.0
CD A:GLU664 3.3 15.4 1.0
CG A:ASN650 3.5 14.1 1.0
OE2 A:GLU664 3.7 16.7 1.0
CA A:SER648 3.7 13.4 1.0
O A:TRP744 4.2 16.1 1.0
O A:HOH1118 4.2 15.3 1.0
N A:ASN650 4.2 13.4 1.0
OD2 A:ASP710 4.3 19.3 1.0
ND2 A:ASN650 4.3 14.0 1.0
N A:LEU649 4.3 13.2 1.0
CB A:ASN650 4.4 14.0 1.0
CG A:GLU664 4.7 14.9 1.0
O A:SER647 4.7 12.4 1.0
O A:HOH1053 4.7 31.7 1.0
CA A:LEU649 4.8 13.2 1.0
O A:HOH962 4.8 20.7 1.0
N A:SER648 4.9 13.1 1.0
O A:HOH1208 5.0 33.8 1.0
CA A:ASN650 5.0 13.8 1.0

Reference:

N.Schormann, C.Deivanayagam. The Structure of the Streptococcus Gordonii Surface Protein Sspb in Complex with Tev Peptide Provides Clues to the Adherence of Oral Streptococcal Adherence to Salivary Agglutinin To Be Published.
Page generated: Mon Dec 14 23:51:29 2020

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