Magnesium in PDB 6q82: Crystal Structure of the Biportin PDR6 in Complex with Rangtp

Protein crystallography data

The structure of Crystal Structure of the Biportin PDR6 in Complex with Rangtp, PDB code: 6q82 was solved by M.Aksu, A.Vera-Rodriguez, S.Trakhanov, D.Gorlich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.89 / 2.99
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 192.990, 192.990, 229.170, 90.00, 90.00, 120.00
R / Rfree (%) 21.8 / 25.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Biportin PDR6 in Complex with Rangtp (pdb code 6q82). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Biportin PDR6 in Complex with Rangtp, PDB code: 6q82:

Magnesium binding site 1 out of 1 in 6q82

Go back to Magnesium Binding Sites List in 6q82
Magnesium binding site 1 out of 1 in the Crystal Structure of the Biportin PDR6 in Complex with Rangtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Biportin PDR6 in Complex with Rangtp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg218

b:82.5
occ:1.00
O2B B:GTP217 2.0 0.8 1.0
OG1 B:THR24 2.1 0.1 1.0
O3G B:GTP217 2.4 89.5 1.0
CG2 B:THR42 2.7 0.9 1.0
OG1 B:THR42 2.9 0.6 1.0
PB B:GTP217 3.2 88.2 1.0
PG B:GTP217 3.2 81.7 1.0
O1G B:GTP217 3.3 96.0 1.0
CB B:THR42 3.4 0.8 1.0
CB B:THR24 3.4 0.6 1.0
OD1 B:ASP65 3.6 0.5 1.0
OD2 B:ASP65 3.6 0.9 1.0
O3B B:GTP217 3.7 80.2 1.0
O1B B:GTP217 3.8 80.7 1.0
CG B:ASP65 3.9 0.9 1.0
N B:THR42 4.0 95.9 1.0
N B:THR24 4.0 87.7 1.0
O B:THR66 4.0 86.6 1.0
CA B:THR24 4.2 89.2 1.0
O2A B:GTP217 4.2 92.1 1.0
CA B:THR42 4.3 0.4 1.0
CG2 B:THR24 4.4 98.1 1.0
O3A B:GTP217 4.5 73.3 1.0
O2G B:GTP217 4.6 96.0 1.0
CE B:LYS23 4.7 85.8 1.0
CB B:LYS23 4.8 84.6 1.0
PA B:GTP217 4.9 81.4 1.0
C B:LYS23 5.0 86.9 1.0

Reference:

M.Aksu, S.Trakhanov, A.Vera Rodriguez, D.Gorlich. Structural Basis For the Nuclear Import and Export Functions of the Biportin PDR6/KAP122. J.Cell Biol. V. 218 1839 2019.
ISSN: ESSN 1540-8140
PubMed: 31023722
DOI: 10.1083/JCB.201812093
Page generated: Mon Dec 14 23:51:44 2020

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