Atomistry » Magnesium » PDB 6q5a-6qin » 6q82
Atomistry »
  Magnesium »
    PDB 6q5a-6qin »
      6q82 »

Magnesium in PDB 6q82: Crystal Structure of the Biportin PDR6 in Complex with Rangtp

Protein crystallography data

The structure of Crystal Structure of the Biportin PDR6 in Complex with Rangtp, PDB code: 6q82 was solved by M.Aksu, A.Vera-Rodriguez, S.Trakhanov, D.Gorlich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.89 / 2.99
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 192.990, 192.990, 229.170, 90.00, 90.00, 120.00
R / Rfree (%) 21.8 / 25.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Biportin PDR6 in Complex with Rangtp (pdb code 6q82). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Biportin PDR6 in Complex with Rangtp, PDB code: 6q82:

Magnesium binding site 1 out of 1 in 6q82

Go back to Magnesium Binding Sites List in 6q82
Magnesium binding site 1 out of 1 in the Crystal Structure of the Biportin PDR6 in Complex with Rangtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Biportin PDR6 in Complex with Rangtp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg218

b:82.5
occ:1.00
O2B B:GTP217 2.0 0.8 1.0
OG1 B:THR24 2.1 0.1 1.0
O3G B:GTP217 2.4 89.5 1.0
CG2 B:THR42 2.7 0.9 1.0
OG1 B:THR42 2.9 0.6 1.0
PB B:GTP217 3.2 88.2 1.0
PG B:GTP217 3.2 81.7 1.0
O1G B:GTP217 3.3 96.0 1.0
CB B:THR42 3.4 0.8 1.0
CB B:THR24 3.4 0.6 1.0
OD1 B:ASP65 3.6 0.5 1.0
OD2 B:ASP65 3.6 0.9 1.0
O3B B:GTP217 3.7 80.2 1.0
O1B B:GTP217 3.8 80.7 1.0
CG B:ASP65 3.9 0.9 1.0
N B:THR42 4.0 95.9 1.0
N B:THR24 4.0 87.7 1.0
O B:THR66 4.0 86.6 1.0
CA B:THR24 4.2 89.2 1.0
O2A B:GTP217 4.2 92.1 1.0
CA B:THR42 4.3 0.4 1.0
CG2 B:THR24 4.4 98.1 1.0
O3A B:GTP217 4.5 73.3 1.0
O2G B:GTP217 4.6 96.0 1.0
CE B:LYS23 4.7 85.8 1.0
CB B:LYS23 4.8 84.6 1.0
PA B:GTP217 4.9 81.4 1.0
C B:LYS23 5.0 86.9 1.0

Reference:

M.Aksu, S.Trakhanov, A.Vera Rodriguez, D.Gorlich. Structural Basis For the Nuclear Import and Export Functions of the Biportin PDR6/KAP122. J.Cell Biol. V. 218 1839 2019.
ISSN: ESSN 1540-8140
PubMed: 31023722
DOI: 10.1083/JCB.201812093
Page generated: Tue Oct 1 15:25:20 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy