Atomistry » Magnesium » PDB 6q5a-6qin » 6qct
Atomistry »
  Magnesium »
    PDB 6q5a-6qin »
      6qct »

Magnesium in PDB 6qct: Influenza B Polymerase Elongation Complex

Enzymatic activity of Influenza B Polymerase Elongation Complex

All present enzymatic activity of Influenza B Polymerase Elongation Complex:
2.7.7.48;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Influenza B Polymerase Elongation Complex (pdb code 6qct). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Influenza B Polymerase Elongation Complex, PDB code: 6qct:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6qct

Go back to Magnesium Binding Sites List in 6qct
Magnesium binding site 1 out of 2 in the Influenza B Polymerase Elongation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Influenza B Polymerase Elongation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:63.5
occ:1.00
OD1 A:ASP109 2.1 65.1 1.0
OE2 A:GLU81 2.1 63.6 1.0
OE1 A:GLU81 2.4 63.6 1.0
CD A:GLU81 2.5 63.6 1.0
CG A:ASP109 2.9 65.1 1.0
OD2 A:ASP109 3.2 65.1 1.0
O A:LEU107 3.7 60.7 1.0
CG A:GLU81 3.8 63.6 1.0
OE1 A:GLU120 4.0 71.9 1.0
CB A:ASP109 4.2 65.1 1.0
CB A:GLU81 4.5 63.6 1.0
CE1 A:HIS41 4.7 76.4 1.0
CA A:ASP109 4.7 65.1 1.0
OE2 A:GLU120 4.7 71.9 1.0
N A:ASP109 4.7 65.1 1.0
CD A:GLU120 4.8 71.9 1.0
C A:ALA108 4.9 62.6 1.0
C A:LEU107 4.9 60.7 1.0
NE2 A:HIS41 5.0 76.4 1.0

Magnesium binding site 2 out of 2 in 6qct

Go back to Magnesium Binding Sites List in 6qct
Magnesium binding site 2 out of 2 in the Influenza B Polymerase Elongation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Influenza B Polymerase Elongation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg801

b:24.7
occ:1.00
OD1 B:ASP445 2.1 28.9 1.0
OD2 B:ASP445 2.2 28.9 1.0
CG B:ASP445 2.4 28.9 1.0
O B:GLY304 2.7 27.2 1.0
CB B:ASP445 3.9 28.9 1.0
C B:GLY304 3.9 27.2 1.0
OE1 B:GLU490 4.2 29.8 1.0
OE2 B:GLU490 4.2 29.8 1.0
O B:GLU490 4.4 29.8 1.0
CD B:GLU490 4.4 29.8 1.0
CG B:ASP305 4.4 29.6 1.0
CB B:ASP305 4.4 29.6 1.0
O B:PHE446 4.5 26.8 1.0
N B:THR492 4.6 29.6 1.0
OD1 B:ASP305 4.6 29.6 1.0
CA B:ASP445 4.6 28.9 1.0
CA B:ASP305 4.7 29.6 1.0
N B:GLY304 4.7 27.2 1.0
N B:ASP305 4.7 29.6 1.0
OD2 B:ASP305 4.8 29.6 1.0
CG2 B:THR303 4.9 28.3 1.0
CA B:PHE491 4.9 29.6 1.0
N B:PHE446 5.0 26.8 1.0
CA B:GLY304 5.0 27.2 1.0

Reference:

T.Kouba, P.Drncova, S.Cusack. Structural Snapshots of Actively Transcribing Influenza Polymerase. Nat.Struct.Mol.Biol. V. 26 460 2019.
ISSN: ESSN 1545-9985
PubMed: 31160782
DOI: 10.1038/S41594-019-0232-Z
Page generated: Tue Oct 1 15:26:07 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy