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Magnesium in PDB 6qdd: Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105

Enzymatic activity of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105

All present enzymatic activity of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105:
2.3.1.97;

Protein crystallography data

The structure of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105, PDB code: 6qdd was solved by J.A.Brannigan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.00 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.154, 90.849, 53.263, 90.00, 112.79, 90.00
R / Rfree (%) 18.1 / 22.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105 (pdb code 6qdd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105, PDB code: 6qdd:

Magnesium binding site 1 out of 1 in 6qdd

Go back to Magnesium Binding Sites List in 6qdd
Magnesium binding site 1 out of 1 in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000105 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1003

b:30.9
occ:1.00
 O A:LEU175 2.7 28.9 1.0
O1A A:MYA1001 2.8 23.4 1.0
N A:LYS178 2.9 26.6 1.0
O5A A:MYA1001 3.0 20.3 1.0
N A:LEU180 3.1 24.7 1.0
N A:ARG179 3.3 29.7 1.0
CB A:LEU180 3.4 25.4 1.0
N A:GLU177 3.4 25.9 1.0
C A:LYS178 3.5 28.4 1.0
CA A:LYS178 3.5 29.9 1.0
CB A:LYS178 3.7 30.4 1.0
P1A A:MYA1001 3.7 22.7 1.0
C A:ARG176 3.7 27.5 1.0
CA A:LEU180 3.8 25.1 1.0
O2A A:MYA1001 3.8 22.6 1.0
C A:LEU175 3.8 24.5 1.0
CA A:ARG176 3.9 23.6 1.0
C A:GLU177 4.0 29.9 1.0
CG1 A:VAL171 4.1 17.7 1.0
C A:ARG179 4.1 30.0 1.0
CA A:GLU177 4.1 26.9 1.0
P2A A:MYA1001 4.2 20.0 1.0
CA A:ARG179 4.2 29.1 1.0
N A:ALA181 4.3 20.1 1.0
O A:LYS178 4.3 31.4 1.0
N A:ARG176 4.3 24.4 1.0
O3A A:MYA1001 4.4 20.4 1.0
O A:ARG176 4.5 30.8 1.0
C A:LEU180 4.6 22.6 1.0
CG A:LYS178 4.7 36.9 1.0
CG A:LEU180 4.7 26.2 1.0
O6A A:MYA1001 4.8 19.0 1.0
CG2 A:VAL171 4.8 20.7 1.0
CB A:VAL171 4.8 17.7 1.0
CD2 A:LEU180 5.0 25.4 1.0

Reference:

J.A.Brannigan, J.A.Brannigan. N/A N/A.
Page generated: Tue Oct 1 15:27:27 2024

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