Magnesium in PDB 6qde: Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000877

Enzymatic activity of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000877

All present enzymatic activity of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000877:
2.3.1.97;

Protein crystallography data

The structure of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000877, PDB code: 6qde was solved by J.A.Brannigan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.00 / 1.45
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.874, 90.474, 53.268, 90.00, 111.72, 90.00
R / Rfree (%) 16.1 / 19.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000877 (pdb code 6qde). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000877, PDB code: 6qde:

Magnesium binding site 1 out of 1 in 6qde

Go back to Magnesium Binding Sites List in 6qde
Magnesium binding site 1 out of 1 in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000877


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000877 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:18.1
occ:1.00
 O A:LEU175 2.7 10.9 1.0
O1A A:MYA504 2.9 8.5 1.0
N A:LYS178 2.9 11.2 1.0
N A:LEU180 3.1 8.5 1.0
O5A A:MYA504 3.1 8.2 1.0
N A:ARG179 3.3 9.3 1.0
N A:GLU177 3.4 10.3 1.0
CA A:LYS178 3.5 11.3 1.0
CB A:LEU180 3.5 8.5 1.0
C A:LYS178 3.5 11.0 1.0
P1A A:MYA504 3.7 8.2 1.0
CB A:LYS178 3.7 13.6 1.0
O2A A:MYA504 3.7 8.7 1.0
C A:ARG176 3.8 10.3 1.0
C A:LEU175 3.8 11.0 1.0
CA A:LEU180 3.9 8.0 1.0
C A:GLU177 3.9 12.9 1.0
CA A:ARG176 4.0 10.1 1.0
C A:ARG179 4.1 9.5 1.0
CG1 A:VAL171 4.1 7.7 1.0
CA A:GLU177 4.1 12.8 1.0
CA A:ARG179 4.2 9.4 1.0
P2A A:MYA504 4.2 8.7 1.0
N A:ALA181 4.3 7.9 1.0
O A:LYS178 4.3 11.3 1.0
O3A A:MYA504 4.4 8.8 1.0
N A:ARG176 4.4 9.9 1.0
CG A:LYS178 4.5 15.3 1.0
C A:LEU180 4.6 8.0 1.0
O A:ARG176 4.6 11.7 1.0
O6A A:MYA504 4.7 7.9 1.0
CG A:LEU180 4.8 10.0 1.0
CG2 A:VAL171 4.8 7.5 1.0
CB A:VAL171 4.9 7.1 1.0

Reference:

J.A.Brannigan, J.A.Brannigan. N/A N/A.
Page generated: Mon Dec 14 23:52:15 2020

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