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Magnesium in PDB 6qdf: Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000096

Enzymatic activity of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000096

All present enzymatic activity of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000096:
2.3.1.97;

Protein crystallography data

The structure of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000096, PDB code: 6qdf was solved by J.A.Brannigan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.00 / 1.49
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.519, 90.286, 53.010, 90.00, 111.83, 90.00
R / Rfree (%) 17.2 / 21.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000096 (pdb code 6qdf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000096, PDB code: 6qdf:

Magnesium binding site 1 out of 1 in 6qdf

Go back to Magnesium Binding Sites List in 6qdf
Magnesium binding site 1 out of 1 in the Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000096


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Leishmania Major N-Myristoyltransferase in Complex with Thienopyrimidine Inhibitor Imp-0000096 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:26.4
occ:1.00
 O A:LEU175 2.7 20.9 1.0
O1A A:MYA1001 2.8 15.8 1.0
N A:LYS178 2.9 20.3 1.0
O5A A:MYA1001 3.0 15.9 1.0
N A:LEU180 3.1 16.5 1.0
N A:GLU177 3.4 19.0 1.0
N A:ARG179 3.4 18.5 1.0
CB A:LEU180 3.4 18.1 1.0
CA A:LYS178 3.5 23.5 1.0
C A:LYS178 3.6 20.0 1.0
CB A:LYS178 3.7 23.8 1.0
P1A A:MYA1001 3.7 16.6 1.0
O2A A:MYA1001 3.8 17.7 1.0
C A:ARG176 3.8 20.3 1.0
CA A:LEU180 3.8 16.9 1.0
C A:LEU175 3.9 19.3 1.0
C A:GLU177 3.9 22.0 1.0
CA A:ARG176 4.0 17.2 1.0
CG1 A:VAL171 4.1 17.3 1.0
CA A:GLU177 4.1 20.4 1.0
C A:ARG179 4.1 17.5 1.0
P2A A:MYA1001 4.2 16.3 1.0
CA A:ARG179 4.2 19.4 1.0
N A:ALA181 4.3 16.5 1.0
O3A A:MYA1001 4.3 16.2 1.0
N A:ARG176 4.4 17.9 1.0
O A:LYS178 4.4 21.0 1.0
O A:ARG176 4.5 21.8 1.0
C A:LEU180 4.6 15.9 1.0
CG A:LYS178 4.6 29.7 1.0
O6A A:MYA1001 4.7 14.9 1.0
CG2 A:VAL171 4.7 13.7 1.0
CG A:LEU180 4.8 20.4 1.0
CB A:VAL171 4.9 13.9 1.0

Reference:

J.A.Brannigan, J.A.Brannigan. N/A N/A.
Page generated: Tue Oct 1 15:27:35 2024

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