Magnesium in PDB 6qel: E. Coli Dnabc Apo Complex
Enzymatic activity of E. Coli Dnabc Apo Complex
All present enzymatic activity of E. Coli Dnabc Apo Complex:
3.6.4.12;
Other elements in 6qel:
The structure of E. Coli Dnabc Apo Complex also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Magnesium atom in the E. Coli Dnabc Apo Complex
(pdb code 6qel). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the
E. Coli Dnabc Apo Complex, PDB code: 6qel:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 12 in 6qel
Go back to
Magnesium Binding Sites List in 6qel
Magnesium binding site 1 out
of 12 in the E. Coli Dnabc Apo Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of E. Coli Dnabc Apo Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1002
b:35.5
occ:1.00
|
O2B
|
A:ADP1001
|
2.0
|
42.4
|
1.0
|
OE2
|
A:GLU262
|
2.1
|
42.3
|
1.0
|
OG1
|
A:THR238
|
2.3
|
33.3
|
1.0
|
HG21
|
A:THR238
|
3.1
|
33.3
|
1.0
|
OD2
|
A:ASP343
|
3.2
|
27.8
|
1.0
|
PB
|
A:ADP1001
|
3.2
|
42.4
|
1.0
|
CD
|
A:GLU262
|
3.3
|
42.3
|
1.0
|
CB
|
A:THR238
|
3.4
|
33.3
|
1.0
|
OD1
|
A:ASP343
|
3.5
|
27.8
|
1.0
|
HB
|
A:THR238
|
3.6
|
33.3
|
1.0
|
CG2
|
A:THR238
|
3.7
|
33.3
|
1.0
|
O1B
|
A:ADP1001
|
3.7
|
42.4
|
1.0
|
CG
|
A:ASP343
|
3.7
|
27.8
|
1.0
|
OE1
|
A:GLU262
|
3.9
|
42.3
|
1.0
|
O3B
|
A:ADP1001
|
3.9
|
42.4
|
1.0
|
HG23
|
A:THR238
|
4.0
|
33.3
|
1.0
|
HG2
|
A:GLU262
|
4.3
|
42.3
|
1.0
|
O2A
|
A:ADP1001
|
4.4
|
42.4
|
1.0
|
CG
|
A:GLU262
|
4.4
|
42.3
|
1.0
|
O3A
|
A:ADP1001
|
4.4
|
42.4
|
1.0
|
H
|
A:THR238
|
4.5
|
33.3
|
1.0
|
HG22
|
A:THR238
|
4.5
|
33.3
|
1.0
|
HZ3
|
A:LYS237
|
4.5
|
32.2
|
1.0
|
HG3
|
A:GLU262
|
4.6
|
42.3
|
1.0
|
HB2
|
A:TYR344
|
4.6
|
32.2
|
1.0
|
HE2
|
A:LYS237
|
4.6
|
32.2
|
1.0
|
CA
|
A:THR238
|
4.7
|
33.3
|
1.0
|
HA
|
A:THR238
|
4.8
|
33.3
|
1.0
|
HZ1
|
A:LYS237
|
4.8
|
32.2
|
1.0
|
HG3
|
A:LYS237
|
4.8
|
32.2
|
1.0
|
PA
|
A:ADP1001
|
5.0
|
42.4
|
1.0
|
N
|
A:THR238
|
5.0
|
33.3
|
1.0
|
|
Magnesium binding site 2 out
of 12 in 6qel
Go back to
Magnesium Binding Sites List in 6qel
Magnesium binding site 2 out
of 12 in the E. Coli Dnabc Apo Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of E. Coli Dnabc Apo Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1002
b:15.7
occ:1.00
|
OG1
|
B:THR238
|
2.0
|
12.4
|
1.0
|
OE1
|
B:GLU262
|
2.0
|
18.9
|
1.0
|
OE2
|
B:GLU262
|
2.1
|
18.9
|
1.0
|
O2B
|
B:ADP1001
|
2.1
|
14.8
|
1.0
|
HH22
|
A:ARG442
|
2.2
|
17.5
|
1.0
|
CD
|
B:GLU262
|
2.3
|
18.9
|
1.0
|
NH2
|
A:ARG442
|
2.7
|
17.5
|
1.0
|
HG21
|
B:THR238
|
2.8
|
12.4
|
1.0
|
HH21
|
A:ARG442
|
2.8
|
17.5
|
1.0
|
CB
|
B:THR238
|
3.1
|
12.4
|
1.0
|
HB
|
B:THR238
|
3.2
|
12.4
|
1.0
|
CG2
|
B:THR238
|
3.4
|
12.4
|
1.0
|
PB
|
B:ADP1001
|
3.5
|
14.8
|
1.0
|
HG23
|
B:THR238
|
3.8
|
12.4
|
1.0
|
CG
|
B:GLU262
|
3.8
|
18.9
|
1.0
|
O3A
|
B:ADP1001
|
3.8
|
14.8
|
1.0
|
CZ
|
A:ARG442
|
3.9
|
17.5
|
1.0
|
O1A
|
B:ADP1001
|
3.9
|
14.8
|
1.0
|
OD1
|
B:ASP343
|
4.0
|
14.4
|
1.0
|
HG2
|
B:GLU262
|
4.0
|
18.9
|
1.0
|
HH12
|
A:ARG442
|
4.0
|
17.5
|
1.0
|
O3B
|
B:ADP1001
|
4.1
|
14.8
|
1.0
|
HG22
|
B:THR238
|
4.2
|
12.4
|
1.0
|
H
|
B:THR238
|
4.2
|
12.4
|
1.0
|
PA
|
B:ADP1001
|
4.3
|
14.8
|
1.0
|
HG3
|
B:GLU262
|
4.3
|
18.9
|
1.0
|
CA
|
B:THR238
|
4.4
|
12.4
|
1.0
|
HH22
|
B:ARG271
|
4.4
|
19.1
|
1.0
|
NH1
|
A:ARG442
|
4.4
|
17.5
|
1.0
|
OD2
|
B:ASP343
|
4.5
|
14.4
|
1.0
|
HZ3
|
B:LYS237
|
4.5
|
12.6
|
1.0
|
HB3
|
B:GLU262
|
4.5
|
18.9
|
1.0
|
HA
|
B:THR238
|
4.5
|
12.4
|
1.0
|
O2A
|
B:ADP1001
|
4.6
|
14.8
|
1.0
|
HD3
|
A:ARG442
|
4.6
|
17.5
|
1.0
|
O1B
|
B:ADP1001
|
4.6
|
14.8
|
1.0
|
HD22
|
B:LEU382
|
4.6
|
11.4
|
1.0
|
CB
|
B:GLU262
|
4.6
|
18.9
|
1.0
|
HB2
|
B:GLU262
|
4.7
|
18.9
|
1.0
|
CG
|
B:ASP343
|
4.7
|
14.4
|
1.0
|
N
|
B:THR238
|
4.7
|
12.4
|
1.0
|
HD23
|
B:LEU382
|
4.7
|
11.4
|
1.0
|
HB2
|
B:TYR344
|
4.8
|
19.2
|
1.0
|
HD21
|
B:LEU382
|
4.9
|
11.4
|
1.0
|
HE2
|
B:MET263
|
4.9
|
20.2
|
1.0
|
NE
|
A:ARG442
|
4.9
|
17.5
|
1.0
|
CD2
|
B:LEU382
|
5.0
|
11.4
|
1.0
|
|
Magnesium binding site 3 out
of 12 in 6qel
Go back to
Magnesium Binding Sites List in 6qel
Magnesium binding site 3 out
of 12 in the E. Coli Dnabc Apo Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of E. Coli Dnabc Apo Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg1002
b:18.4
occ:1.00
|
O2B
|
C:ADP1001
|
1.9
|
16.6
|
1.0
|
OE1
|
C:GLU262
|
1.9
|
18.4
|
1.0
|
OG1
|
C:THR238
|
2.0
|
20.1
|
1.0
|
OE2
|
C:GLU262
|
2.2
|
18.4
|
1.0
|
CD
|
C:GLU262
|
2.4
|
18.4
|
1.0
|
HH22
|
B:ARG442
|
2.9
|
14.8
|
1.0
|
HG21
|
C:THR238
|
2.9
|
20.1
|
1.0
|
CB
|
C:THR238
|
3.1
|
20.1
|
1.0
|
HH21
|
B:ARG442
|
3.2
|
14.8
|
1.0
|
NH2
|
B:ARG442
|
3.3
|
14.8
|
1.0
|
HB
|
C:THR238
|
3.3
|
20.1
|
1.0
|
PB
|
C:ADP1001
|
3.4
|
16.6
|
1.0
|
CG2
|
C:THR238
|
3.4
|
20.1
|
1.0
|
OD1
|
C:ASP343
|
3.7
|
28.2
|
1.0
|
HG23
|
C:THR238
|
3.7
|
20.1
|
1.0
|
CG
|
C:GLU262
|
3.9
|
18.4
|
1.0
|
OD2
|
C:ASP343
|
3.9
|
28.2
|
1.0
|
HZ1
|
C:LYS237
|
4.1
|
22.2
|
1.0
|
O3B
|
C:ADP1001
|
4.1
|
16.6
|
1.0
|
HG3
|
C:GLU262
|
4.2
|
18.4
|
1.0
|
HE2
|
C:LYS237
|
4.2
|
22.2
|
1.0
|
O3A
|
C:ADP1001
|
4.2
|
16.6
|
1.0
|
CG
|
C:ASP343
|
4.3
|
28.2
|
1.0
|
HG22
|
C:THR238
|
4.3
|
20.1
|
1.0
|
H
|
C:THR238
|
4.3
|
20.1
|
1.0
|
O1B
|
C:ADP1001
|
4.4
|
16.6
|
1.0
|
HG2
|
C:GLU262
|
4.4
|
18.4
|
1.0
|
HB2
|
C:TYR344
|
4.4
|
20.0
|
1.0
|
HB2
|
C:GLU262
|
4.4
|
18.4
|
1.0
|
HZ3
|
C:LYS237
|
4.4
|
22.2
|
1.0
|
CZ
|
B:ARG442
|
4.4
|
14.8
|
1.0
|
CA
|
C:THR238
|
4.4
|
20.1
|
1.0
|
O2A
|
C:ADP1001
|
4.5
|
16.6
|
1.0
|
HA
|
C:THR238
|
4.6
|
20.1
|
1.0
|
CB
|
C:GLU262
|
4.6
|
18.4
|
1.0
|
NZ
|
C:LYS237
|
4.6
|
22.2
|
1.0
|
HG3
|
C:LYS237
|
4.6
|
22.2
|
1.0
|
HB3
|
C:GLU262
|
4.6
|
18.4
|
1.0
|
HH12
|
B:ARG442
|
4.7
|
14.8
|
1.0
|
N
|
C:THR238
|
4.8
|
20.1
|
1.0
|
HH22
|
C:ARG271
|
4.8
|
17.8
|
1.0
|
HD22
|
C:LEU382
|
4.9
|
34.1
|
1.0
|
PA
|
C:ADP1001
|
4.9
|
16.6
|
1.0
|
HD3
|
B:ARG442
|
4.9
|
14.8
|
1.0
|
CE
|
C:LYS237
|
4.9
|
22.2
|
1.0
|
HD23
|
C:LEU382
|
4.9
|
34.1
|
1.0
|
NH1
|
B:ARG442
|
4.9
|
14.8
|
1.0
|
|
Magnesium binding site 4 out
of 12 in 6qel
Go back to
Magnesium Binding Sites List in 6qel
Magnesium binding site 4 out
of 12 in the E. Coli Dnabc Apo Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of E. Coli Dnabc Apo Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg1002
b:11.2
occ:1.00
|
OE1
|
D:GLU262
|
1.9
|
13.7
|
1.0
|
O2B
|
D:ADP1001
|
2.0
|
9.3
|
1.0
|
OG1
|
D:THR238
|
2.0
|
7.8
|
1.0
|
OE2
|
D:GLU262
|
2.1
|
13.7
|
1.0
|
CD
|
D:GLU262
|
2.3
|
13.7
|
1.0
|
HG21
|
D:THR238
|
2.9
|
7.8
|
1.0
|
HH22
|
C:ARG442
|
2.9
|
13.1
|
1.0
|
CB
|
D:THR238
|
3.1
|
7.8
|
1.0
|
PB
|
D:ADP1001
|
3.2
|
9.3
|
1.0
|
HB
|
D:THR238
|
3.3
|
7.8
|
1.0
|
HH21
|
C:ARG442
|
3.3
|
13.1
|
1.0
|
NH2
|
C:ARG442
|
3.4
|
13.1
|
1.0
|
CG2
|
D:THR238
|
3.5
|
7.8
|
1.0
|
OD1
|
D:ASP343
|
3.5
|
9.9
|
1.0
|
O3B
|
D:ADP1001
|
3.6
|
9.3
|
1.0
|
CG
|
D:GLU262
|
3.8
|
13.7
|
1.0
|
HG23
|
D:THR238
|
3.8
|
7.8
|
1.0
|
HG2
|
D:GLU262
|
4.2
|
13.7
|
1.0
|
O3A
|
D:ADP1001
|
4.2
|
9.3
|
1.0
|
OD2
|
D:ASP343
|
4.2
|
9.9
|
1.0
|
HB2
|
D:TYR344
|
4.2
|
11.8
|
1.0
|
HE2
|
D:LYS237
|
4.2
|
8.3
|
1.0
|
H
|
D:THR238
|
4.3
|
7.8
|
1.0
|
HG22
|
D:THR238
|
4.3
|
7.8
|
1.0
|
HG3
|
D:GLU262
|
4.3
|
13.7
|
1.0
|
CG
|
D:ASP343
|
4.3
|
9.9
|
1.0
|
O1B
|
D:ADP1001
|
4.3
|
9.3
|
1.0
|
HD22
|
D:LEU382
|
4.3
|
7.0
|
1.0
|
HZ1
|
D:LYS237
|
4.3
|
8.3
|
1.0
|
O2A
|
D:ADP1001
|
4.4
|
9.3
|
1.0
|
CA
|
D:THR238
|
4.4
|
7.8
|
1.0
|
HD23
|
D:LEU382
|
4.4
|
7.0
|
1.0
|
HB3
|
D:GLU262
|
4.5
|
13.7
|
1.0
|
CZ
|
C:ARG442
|
4.5
|
13.1
|
1.0
|
HB2
|
D:GLU262
|
4.6
|
13.7
|
1.0
|
HA
|
D:THR238
|
4.6
|
7.8
|
1.0
|
CB
|
D:GLU262
|
4.6
|
13.7
|
1.0
|
HD21
|
D:LEU382
|
4.7
|
7.0
|
1.0
|
CD2
|
D:LEU382
|
4.7
|
7.0
|
1.0
|
HG3
|
D:LYS237
|
4.7
|
8.3
|
1.0
|
N
|
D:THR238
|
4.7
|
7.8
|
1.0
|
PA
|
D:ADP1001
|
4.7
|
9.3
|
1.0
|
HZ3
|
D:LYS237
|
4.7
|
8.3
|
1.0
|
HH12
|
C:ARG442
|
4.8
|
13.1
|
1.0
|
NZ
|
D:LYS237
|
4.9
|
8.3
|
1.0
|
HD3
|
C:ARG442
|
5.0
|
13.1
|
1.0
|
|
Magnesium binding site 5 out
of 12 in 6qel
Go back to
Magnesium Binding Sites List in 6qel
Magnesium binding site 5 out
of 12 in the E. Coli Dnabc Apo Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of E. Coli Dnabc Apo Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg1002
b:17.1
occ:1.00
|
OG1
|
E:THR238
|
1.9
|
14.1
|
1.0
|
OE1
|
E:GLU262
|
2.0
|
15.2
|
1.0
|
O2B
|
E:ADP1001
|
2.0
|
12.8
|
1.0
|
OE2
|
E:GLU262
|
2.1
|
15.2
|
1.0
|
CD
|
E:GLU262
|
2.3
|
15.2
|
1.0
|
HG21
|
E:THR238
|
2.9
|
14.1
|
1.0
|
CB
|
E:THR238
|
2.9
|
14.1
|
1.0
|
HB
|
E:THR238
|
3.0
|
14.1
|
1.0
|
CG2
|
E:THR238
|
3.4
|
14.1
|
1.0
|
PB
|
E:ADP1001
|
3.5
|
12.8
|
1.0
|
HH21
|
D:ARG442
|
3.6
|
13.3
|
1.0
|
OD1
|
E:ASP343
|
3.7
|
15.8
|
1.0
|
O2A
|
E:ADP1001
|
3.8
|
12.8
|
1.0
|
CG
|
E:GLU262
|
3.8
|
15.2
|
1.0
|
HG23
|
E:THR238
|
3.8
|
14.1
|
1.0
|
HH22
|
D:ARG442
|
3.9
|
13.3
|
1.0
|
H
|
E:THR238
|
3.9
|
14.1
|
1.0
|
NH2
|
D:ARG442
|
4.0
|
13.3
|
1.0
|
HG2
|
E:GLU262
|
4.0
|
15.2
|
1.0
|
O3A
|
E:ADP1001
|
4.1
|
12.8
|
1.0
|
OD2
|
E:ASP343
|
4.1
|
15.8
|
1.0
|
HG22
|
E:THR238
|
4.2
|
14.1
|
1.0
|
O3B
|
E:ADP1001
|
4.2
|
12.8
|
1.0
|
CA
|
E:THR238
|
4.2
|
14.1
|
1.0
|
PA
|
E:ADP1001
|
4.3
|
12.8
|
1.0
|
HG3
|
E:GLU262
|
4.3
|
15.2
|
1.0
|
HB3
|
E:GLU262
|
4.3
|
15.2
|
1.0
|
CG
|
E:ASP343
|
4.3
|
15.8
|
1.0
|
O1B
|
E:ADP1001
|
4.4
|
12.8
|
1.0
|
HB2
|
E:TYR344
|
4.4
|
16.3
|
1.0
|
HB2
|
E:GLU262
|
4.5
|
15.2
|
1.0
|
HA
|
E:THR238
|
4.5
|
14.1
|
1.0
|
N
|
E:THR238
|
4.5
|
14.1
|
1.0
|
CB
|
E:GLU262
|
4.5
|
15.2
|
1.0
|
O1A
|
E:ADP1001
|
4.5
|
12.8
|
1.0
|
HD3
|
D:ARG442
|
4.6
|
13.3
|
1.0
|
HZ3
|
E:LYS237
|
4.7
|
15.6
|
1.0
|
HD23
|
E:LEU382
|
4.7
|
19.3
|
1.0
|
HD22
|
E:LEU382
|
4.8
|
19.3
|
1.0
|
HG3
|
E:LYS237
|
4.9
|
15.6
|
1.0
|
HH22
|
E:ARG271
|
5.0
|
18.9
|
1.0
|
|
Magnesium binding site 6 out
of 12 in 6qel
Go back to
Magnesium Binding Sites List in 6qel
Magnesium binding site 6 out
of 12 in the E. Coli Dnabc Apo Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of E. Coli Dnabc Apo Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg1002
b:26.3
occ:1.00
|
OG1
|
F:THR238
|
2.0
|
27.0
|
1.0
|
O2B
|
F:ADP1001
|
2.1
|
22.4
|
1.0
|
OE1
|
F:GLU262
|
2.1
|
27.8
|
1.0
|
OE2
|
F:GLU262
|
2.3
|
27.8
|
1.0
|
CD
|
F:GLU262
|
2.5
|
27.8
|
1.0
|
HG21
|
F:THR238
|
3.1
|
27.0
|
1.0
|
HH21
|
E:ARG442
|
3.2
|
17.3
|
1.0
|
CB
|
F:THR238
|
3.2
|
27.0
|
1.0
|
HH22
|
E:ARG442
|
3.3
|
17.3
|
1.0
|
NH2
|
E:ARG442
|
3.4
|
17.3
|
1.0
|
CG2
|
F:THR238
|
3.5
|
27.0
|
1.0
|
HB
|
F:THR238
|
3.5
|
27.0
|
1.0
|
PB
|
F:ADP1001
|
3.6
|
22.4
|
1.0
|
O2A
|
F:ADP1001
|
3.6
|
22.4
|
1.0
|
HG23
|
F:THR238
|
3.8
|
27.0
|
1.0
|
CG
|
F:GLU262
|
3.9
|
27.8
|
1.0
|
OD1
|
F:ASP343
|
4.0
|
33.4
|
1.0
|
HG2
|
F:GLU262
|
4.1
|
27.8
|
1.0
|
HB2
|
F:TYR344
|
4.2
|
29.1
|
1.0
|
HZ3
|
F:LYS237
|
4.3
|
26.2
|
1.0
|
O3B
|
F:ADP1001
|
4.3
|
22.4
|
1.0
|
HD3
|
E:ARG442
|
4.3
|
17.3
|
1.0
|
H
|
F:THR238
|
4.3
|
27.0
|
1.0
|
O3A
|
F:ADP1001
|
4.3
|
22.4
|
1.0
|
HG22
|
F:THR238
|
4.4
|
27.0
|
1.0
|
PA
|
F:ADP1001
|
4.4
|
22.4
|
1.0
|
CA
|
F:THR238
|
4.4
|
27.0
|
1.0
|
CZ
|
E:ARG442
|
4.5
|
17.3
|
1.0
|
O1B
|
F:ADP1001
|
4.5
|
22.4
|
1.0
|
HG3
|
F:GLU262
|
4.5
|
27.8
|
1.0
|
HA
|
F:THR238
|
4.5
|
27.0
|
1.0
|
OD2
|
F:ASP343
|
4.5
|
33.4
|
1.0
|
HB3
|
F:GLU262
|
4.6
|
27.8
|
1.0
|
CG
|
F:ASP343
|
4.7
|
33.4
|
1.0
|
CB
|
F:GLU262
|
4.7
|
27.8
|
1.0
|
N
|
F:THR238
|
4.8
|
27.0
|
1.0
|
HB2
|
F:GLU262
|
4.8
|
27.8
|
1.0
|
HE2
|
F:LYS237
|
4.8
|
26.2
|
1.0
|
HZ1
|
F:LYS237
|
4.8
|
26.2
|
1.0
|
O1A
|
F:ADP1001
|
4.9
|
22.4
|
1.0
|
NZ
|
F:LYS237
|
4.9
|
26.2
|
1.0
|
HD22
|
F:LEU382
|
4.9
|
28.4
|
1.0
|
HG3
|
F:LYS237
|
4.9
|
26.2
|
1.0
|
HD23
|
F:LEU382
|
5.0
|
28.4
|
1.0
|
|
Magnesium binding site 7 out
of 12 in 6qel
Go back to
Magnesium Binding Sites List in 6qel
Magnesium binding site 7 out
of 12 in the E. Coli Dnabc Apo Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of E. Coli Dnabc Apo Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg302
b:34.2
occ:1.00
|
O3B
|
G:ADP301
|
2.1
|
65.8
|
1.0
|
OD1
|
G:ASN113
|
2.3
|
57.1
|
1.0
|
O2B
|
G:ADP301
|
2.8
|
65.8
|
1.0
|
PB
|
G:ADP301
|
2.9
|
65.8
|
1.0
|
HZ2
|
G:LYS112
|
3.2
|
58.8
|
1.0
|
HZ3
|
G:LYS112
|
3.4
|
58.8
|
1.0
|
CG
|
G:ASN113
|
3.4
|
57.1
|
1.0
|
OD1
|
G:ASP169
|
3.4
|
59.2
|
1.0
|
HZ1
|
G:LYS112
|
3.5
|
58.8
|
1.0
|
NZ
|
G:LYS112
|
3.5
|
58.8
|
1.0
|
HD22
|
G:ASN113
|
3.8
|
57.1
|
1.0
|
O3A
|
G:ADP301
|
3.9
|
65.8
|
1.0
|
HB2
|
G:LYS112
|
4.0
|
58.8
|
1.0
|
ND2
|
G:ASN113
|
4.0
|
57.1
|
1.0
|
H
|
G:ASN113
|
4.0
|
57.1
|
1.0
|
O1B
|
G:ADP301
|
4.2
|
65.8
|
1.0
|
CG
|
G:ASP169
|
4.3
|
59.2
|
1.0
|
O2A
|
G:ADP301
|
4.3
|
65.8
|
1.0
|
HB2
|
G:ASN113
|
4.4
|
57.1
|
1.0
|
OD2
|
G:ASP169
|
4.4
|
59.2
|
1.0
|
CB
|
G:ASN113
|
4.5
|
57.1
|
1.0
|
PA
|
G:ADP301
|
4.5
|
65.8
|
1.0
|
O1A
|
G:ADP301
|
4.7
|
65.8
|
1.0
|
N
|
G:ASN113
|
4.8
|
57.1
|
1.0
|
HD13
|
G:LEU201
|
4.8
|
53.9
|
1.0
|
HD21
|
G:ASN113
|
4.8
|
57.1
|
1.0
|
CB
|
G:LYS112
|
4.9
|
58.8
|
1.0
|
HG3
|
G:GLU170
|
4.9
|
62.7
|
1.0
|
HB3
|
G:LYS112
|
5.0
|
58.8
|
1.0
|
CE
|
G:LYS112
|
5.0
|
58.8
|
1.0
|
|
Magnesium binding site 8 out
of 12 in 6qel
Go back to
Magnesium Binding Sites List in 6qel
Magnesium binding site 8 out
of 12 in the E. Coli Dnabc Apo Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of E. Coli Dnabc Apo Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg302
b:40.0
occ:1.00
|
OD1
|
H:ASN113
|
1.8
|
44.2
|
1.0
|
F1
|
H:08T301
|
1.9
|
48.5
|
1.0
|
CG
|
H:ASN113
|
3.0
|
44.2
|
1.0
|
BE
|
H:08T301
|
3.2
|
48.5
|
1.0
|
O2B
|
H:08T301
|
3.2
|
48.5
|
1.0
|
HH21
|
G:ARG220
|
3.3
|
49.3
|
1.0
|
HD22
|
H:ASN113
|
3.5
|
44.2
|
1.0
|
HH22
|
G:ARG220
|
3.5
|
49.3
|
1.0
|
OD1
|
H:ASP169
|
3.6
|
39.5
|
1.0
|
HZ3
|
H:LYS112
|
3.6
|
43.6
|
1.0
|
O3B
|
H:08T301
|
3.6
|
48.5
|
1.0
|
ND2
|
H:ASN113
|
3.7
|
44.2
|
1.0
|
NH2
|
G:ARG220
|
3.7
|
49.3
|
1.0
|
HZ2
|
H:LYS112
|
3.7
|
43.6
|
1.0
|
F3
|
H:08T301
|
3.9
|
48.5
|
1.0
|
NZ
|
H:LYS112
|
4.0
|
43.6
|
1.0
|
HZ1
|
H:LYS112
|
4.0
|
43.6
|
1.0
|
HB2
|
H:ASN113
|
4.0
|
44.2
|
1.0
|
PB
|
H:08T301
|
4.0
|
48.5
|
1.0
|
F2
|
H:08T301
|
4.1
|
48.5
|
1.0
|
CB
|
H:ASN113
|
4.1
|
44.2
|
1.0
|
H
|
H:ASN113
|
4.3
|
44.2
|
1.0
|
HD21
|
H:ASN113
|
4.5
|
44.2
|
1.0
|
CG
|
H:ASP169
|
4.5
|
39.5
|
1.0
|
HB2
|
H:LYS112
|
4.5
|
43.6
|
1.0
|
HG3
|
H:GLU170
|
4.6
|
43.2
|
1.0
|
O1A
|
H:08T301
|
4.6
|
48.5
|
1.0
|
OD2
|
H:ASP169
|
4.6
|
39.5
|
1.0
|
HD13
|
H:LEU201
|
4.6
|
36.1
|
1.0
|
HB3
|
H:ASN113
|
4.7
|
44.2
|
1.0
|
CZ
|
G:ARG220
|
4.8
|
49.3
|
1.0
|
HH22
|
G:ARG216
|
4.9
|
49.6
|
1.0
|
O3A
|
H:08T301
|
4.9
|
48.5
|
1.0
|
N
|
H:ASN113
|
5.0
|
44.2
|
1.0
|
|
Magnesium binding site 9 out
of 12 in 6qel
Go back to
Magnesium Binding Sites List in 6qel
Magnesium binding site 9 out
of 12 in the E. Coli Dnabc Apo Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of E. Coli Dnabc Apo Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg302
b:17.9
occ:1.00
|
OD1
|
I:ASN113
|
1.9
|
30.6
|
1.0
|
F1
|
I:08T301
|
2.0
|
35.0
|
1.0
|
OD1
|
I:ASP169
|
2.9
|
29.8
|
1.0
|
CG
|
I:ASN113
|
3.0
|
30.6
|
1.0
|
O2B
|
I:08T301
|
3.0
|
35.0
|
1.0
|
BE
|
I:08T301
|
3.2
|
35.0
|
1.0
|
HD22
|
I:ASN113
|
3.4
|
30.6
|
1.0
|
HZ3
|
I:LYS112
|
3.5
|
32.3
|
1.0
|
HZ2
|
I:LYS112
|
3.6
|
32.3
|
1.0
|
O3B
|
I:08T301
|
3.6
|
35.0
|
1.0
|
ND2
|
I:ASN113
|
3.6
|
30.6
|
1.0
|
F3
|
I:08T301
|
3.7
|
35.0
|
1.0
|
CG
|
I:ASP169
|
3.8
|
29.8
|
1.0
|
NZ
|
I:LYS112
|
3.9
|
32.3
|
1.0
|
HH21
|
H:ARG220
|
3.9
|
37.2
|
1.0
|
PB
|
I:08T301
|
3.9
|
35.0
|
1.0
|
HZ1
|
I:LYS112
|
4.0
|
32.3
|
1.0
|
OD2
|
I:ASP169
|
4.0
|
29.8
|
1.0
|
HB2
|
I:ASN113
|
4.1
|
30.6
|
1.0
|
H
|
I:ASN113
|
4.1
|
30.6
|
1.0
|
F2
|
I:08T301
|
4.2
|
35.0
|
1.0
|
CB
|
I:ASN113
|
4.2
|
30.6
|
1.0
|
HB2
|
I:LYS112
|
4.2
|
32.3
|
1.0
|
HH21
|
H:ARG216
|
4.3
|
36.7
|
1.0
|
HD13
|
I:LEU201
|
4.3
|
27.2
|
1.0
|
HD21
|
I:ASN113
|
4.5
|
30.6
|
1.0
|
HH22
|
H:ARG216
|
4.5
|
36.7
|
1.0
|
NH2
|
H:ARG220
|
4.7
|
37.2
|
1.0
|
NH2
|
H:ARG216
|
4.7
|
36.7
|
1.0
|
N
|
I:ASN113
|
4.7
|
30.6
|
1.0
|
O1A
|
I:08T301
|
4.8
|
35.0
|
1.0
|
HB3
|
I:ASN113
|
4.8
|
30.6
|
1.0
|
HH22
|
H:ARG220
|
4.9
|
37.2
|
1.0
|
O3A
|
I:08T301
|
4.9
|
35.0
|
1.0
|
O1B
|
I:08T301
|
5.0
|
35.0
|
1.0
|
HB3
|
I:LEU201
|
5.0
|
27.2
|
1.0
|
|
Magnesium binding site 10 out
of 12 in 6qel
Go back to
Magnesium Binding Sites List in 6qel
Magnesium binding site 10 out
of 12 in the E. Coli Dnabc Apo Complex
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of E. Coli Dnabc Apo Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg302
b:15.3
occ:1.00
|
OD1
|
J:ASN113
|
1.8
|
26.1
|
1.0
|
F1
|
J:08T301
|
1.9
|
29.2
|
1.0
|
OD1
|
J:ASP169
|
2.9
|
26.7
|
1.0
|
CG
|
J:ASN113
|
2.9
|
26.1
|
1.0
|
O2B
|
J:08T301
|
3.1
|
29.2
|
1.0
|
BE
|
J:08T301
|
3.1
|
29.2
|
1.0
|
HZ2
|
J:LYS112
|
3.3
|
25.6
|
1.0
|
HZ3
|
J:LYS112
|
3.3
|
25.6
|
1.0
|
HD22
|
J:ASN113
|
3.3
|
26.1
|
1.0
|
ND2
|
J:ASN113
|
3.5
|
26.1
|
1.0
|
O3B
|
J:08T301
|
3.6
|
29.2
|
1.0
|
NZ
|
J:LYS112
|
3.6
|
25.6
|
1.0
|
F3
|
J:08T301
|
3.6
|
29.2
|
1.0
|
CG
|
J:ASP169
|
3.7
|
26.7
|
1.0
|
HZ1
|
J:LYS112
|
3.7
|
25.6
|
1.0
|
OD2
|
J:ASP169
|
3.8
|
26.7
|
1.0
|
PB
|
J:08T301
|
4.0
|
29.2
|
1.0
|
H
|
J:ASN113
|
4.0
|
26.1
|
1.0
|
HH21
|
I:ARG220
|
4.0
|
26.8
|
1.0
|
HB2
|
J:ASN113
|
4.1
|
26.1
|
1.0
|
HB2
|
J:LYS112
|
4.1
|
25.6
|
1.0
|
F2
|
J:08T301
|
4.1
|
29.2
|
1.0
|
CB
|
J:ASN113
|
4.2
|
26.1
|
1.0
|
HD21
|
J:ASN113
|
4.4
|
26.1
|
1.0
|
HD13
|
J:LEU201
|
4.5
|
24.7
|
1.0
|
HH22
|
I:ARG216
|
4.6
|
27.9
|
1.0
|
HH21
|
I:ARG216
|
4.6
|
27.9
|
1.0
|
NH2
|
I:ARG220
|
4.7
|
26.8
|
1.0
|
N
|
J:ASN113
|
4.7
|
26.1
|
1.0
|
HH22
|
I:ARG220
|
4.8
|
26.8
|
1.0
|
HB3
|
J:ASN113
|
4.8
|
26.1
|
1.0
|
NH2
|
I:ARG216
|
4.8
|
27.9
|
1.0
|
O1A
|
J:08T301
|
4.9
|
29.2
|
1.0
|
HB3
|
J:LEU201
|
5.0
|
24.7
|
1.0
|
O3A
|
J:08T301
|
5.0
|
29.2
|
1.0
|
H
|
J:GLU170
|
5.0
|
29.5
|
1.0
|
|
Reference:
E.Arias-Palomo,
N.Puri,
V.L.O'shea Murray,
Q.Yan,
J.M.Berger.
Physical Basis For the Loading of A Bacterial Replicative Helicase Onto Dna. Mol.Cell V. 74 173 2019.
ISSN: ISSN 1097-2765
PubMed: 30797687
DOI: 10.1016/J.MOLCEL.2019.01.023
Page generated: Tue Oct 1 15:28:12 2024
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