Magnesium in PDB 6qid: Crystal Structure of Deah-Box Atpase PRP43-S387A

The structure of Crystal Structure of Deah-Box Atpase PRP43-S387A, PDB code: 6qid was solved by F.Hamann, R.Ficner, M.Enders, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.61 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	88.820, 105.450, 119.230, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / 20.8

The structure of Crystal Structure of Deah-Box Atpase PRP43-S387A also contains other interesting chemical elements:

Fluorine	(F)	3 atoms
Chlorine	(Cl)	5 atoms

The binding sites of Magnesium atom in the Crystal Structure of Deah-Box Atpase PRP43-S387A (pdb code 6qid). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Deah-Box Atpase PRP43-S387A, PDB code: 6qid:

Magnesium binding site 1 out of 1 in the Crystal Structure of Deah-Box Atpase PRP43-S387A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Deah-Box Atpase PRP43-S387A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1319 b:23.0 occ:1.00 OG1 A:THR126 2.0 22.7 1.0 F2 A:BEF1323 2.1 25.7 1.0 O A:HOH1603 2.1 23.7 1.0 O A:HOH1484 2.2 20.9 1.0 O A:HOH1524 2.2 19.7 1.0 O2B A:ADP1322 2.3 21.4 1.0 CB A:THR126 3.0 24.9 1.0 BE A:BEF1323 3.3 20.0 1.0 OE2 A:GLU219 3.4 28.8 1.0 OD2 A:ASP218 3.5 22.5 1.0 PB A:ADP1322 3.5 25.3 1.0 O3B A:ADP1322 3.8 23.8 1.0 CG2 A:THR126 3.8 24.3 1.0 N A:THR126 4.0 21.9 1.0 F1 A:BEF1323 4.1 21.6 1.0 CA A:THR126 4.1 25.6 1.0 O2A A:ADP1322 4.1 24.0 1.0 CA A:ALA387 4.1 19.5 1.0 CG A:ASP218 4.2 22.9 1.0 OD1 A:ASP218 4.2 27.2 1.0 O1B A:ADP1322 4.4 20.7 1.0 CB A:ALA387 4.4 16.8 1.0 O3A A:ADP1322 4.5 18.6 1.0 F3 A:BEF1323 4.5 27.9 1.0 O A:ALA387 4.5 19.5 1.0 OE1 A:GLN150 4.6 30.3 1.0 CD A:GLU219 4.6 28.3 1.0 O A:HOH1460 4.6 19.0 1.0 PA A:ADP1322 4.8 24.4 1.0 C A:ALA387 4.9 22.3 1.0 CB A:LYS125 4.9 20.4 1.0 N A:ALA387 5.0 24.1 1.0

F.Hamann, M.Enders, R.Ficner. Structural Basis For Rna Translocation By Deah-Box Atpases. Nucleic Acids Res. V. 47 4349 2019.
ISSN: ESSN 1362-4962
PubMed: 30828714
DOI: 10.1093/NAR/GKZ150