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Magnesium in PDB 6qja: Crystal Structure of the Numa N-Terminal Hook Domain

Protein crystallography data

The structure of Crystal Structure of the Numa N-Terminal Hook Domain, PDB code: 6qja was solved by M.Carminati, M.Mapelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.90 / 1.54
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.730, 112.850, 135.810, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 21.5

Other elements in 6qja:

The structure of Crystal Structure of the Numa N-Terminal Hook Domain also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Numa N-Terminal Hook Domain (pdb code 6qja). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Numa N-Terminal Hook Domain, PDB code: 6qja:

Magnesium binding site 1 out of 1 in 6qja

Go back to Magnesium Binding Sites List in 6qja
Magnesium binding site 1 out of 1 in the Crystal Structure of the Numa N-Terminal Hook Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Numa N-Terminal Hook Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg202

b:23.1
occ:1.00
O D:HOH373 3.1 43.4 1.0
OG D:SER13 3.3 37.9 1.0
N D:GLU120 3.3 22.4 1.0
CD1 D:PHE119 3.7 29.2 1.0
CG D:GLU120 3.8 27.6 1.0
CB D:SER13 3.8 34.0 1.0
CA D:PHE119 3.8 23.2 1.0
CG1 D:ILE123 3.9 23.5 1.0
CB D:PHE119 4.0 24.7 1.0
CB D:GLU120 4.0 24.0 1.0
CG2 D:ILE123 4.0 22.3 1.0
CB D:ILE123 4.0 23.0 1.0
C D:PHE119 4.1 24.1 1.0
CD D:GLU120 4.2 35.3 1.0
CA D:GLU120 4.2 22.9 1.0
CG D:PHE119 4.3 28.4 1.0
OE2 D:GLU120 4.6 37.1 1.0
O D:HOH401 4.8 52.0 1.0
OE1 D:GLU120 4.8 37.3 1.0
CE1 D:PHE119 4.8 31.4 1.0
O D:HOH353 4.9 37.3 1.0
CD1 D:ILE123 4.9 25.1 1.0

Reference:

M.Carminati, M.Mapelli. Crystal Structure of the Numa N-Terminal Hook Domain To Be Published.
Page generated: Tue Oct 1 15:31:31 2024

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