Magnesium in PDB 6qph: Dunaliella Minimal Psi Complex

All present enzymatic activity of Dunaliella Minimal Psi Complex:
1.97.1.12;

The structure of Dunaliella Minimal Psi Complex, PDB code: 6qph was solved by D.Klaiman, I.Caspy, N.Nelson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.95 / 3.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	158.881, 100.506, 191.040, 90.00, 91.73, 90.00
R / Rfree (%)	33.7 / 35.6

The structure of Dunaliella Minimal Psi Complex also contains other interesting chemical elements:

Arsenic	(As)	6 atoms
Iron	(Fe)	12 atoms
Calcium	(Ca)	1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 143;

Binding sites:

The binding sites of Magnesium atom in the Dunaliella Minimal Psi Complex (pdb code 6qph). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 143 binding sites of Magnesium where determined in the Dunaliella Minimal Psi Complex, PDB code: 6qph:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 143 in the Dunaliella Minimal Psi Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Dunaliella Minimal Psi Complex within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg601 b:0.9 occ:1.00 MG 1:CLA601 0.0 0.9 1.0 ND 1:CLA601 2.0 0.9 1.0 NB 1:CLA601 2.0 0.0 1.0 NC 1:CLA601 2.1 0.6 1.0 NA 1:CLA601 2.2 0.5 1.0 C4D 1:CLA601 2.9 0.5 1.0 C4B 1:CLA601 3.0 0.5 1.0 C1C 1:CLA601 3.1 0.9 1.0 C1B 1:CLA601 3.1 0.9 1.0 C1D 1:CLA601 3.1 0.1 1.0 C4A 1:CLA601 3.2 0.2 1.0 C1A 1:CLA601 3.2 0.2 1.0 C4C 1:CLA601 3.2 1.0 1.0 OE1 1:GLU177 3.3 0.7 1.0 CHC 1:CLA601 3.3 0.5 1.0 CHA 1:CLA601 3.4 0.8 1.0 CHB 1:CLA601 3.5 0.5 1.0 CHD 1:CLA601 3.5 0.6 1.0 C38 1:LUT501 3.8 0.7 1.0 C3D 1:CLA601 4.1 0.2 1.0 C3B 1:CLA601 4.2 0.0 1.0 C2B 1:CLA601 4.3 0.3 1.0 C2D 1:CLA601 4.3 0.9 1.0 C2C 1:CLA601 4.4 0.8 1.0 NE 1:ARG80 4.4 0.0 1.0 C3C 1:CLA601 4.4 0.5 1.0 C3A 1:CLA601 4.5 0.7 1.0 C2A 1:CLA601 4.5 0.5 1.0 CD 1:GLU177 4.5 0.6 1.0 C27 1:LUT501 4.6 0.8 1.0 CD 1:ARG80 4.8 1.0 1.0 C25 1:LUT501 4.8 0.2 1.0 CZ 1:ARG80 4.8 0.8 1.0 C28 1:LUT501 4.8 0.9 1.0 CBD 1:CLA601 4.9 0.8 1.0 C26 1:LUT501 5.0 0.1 1.0 CG 1:ARG80 5.0 1.0 1.0

Magnesium binding site 2 out of 143 in the Dunaliella Minimal Psi Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Dunaliella Minimal Psi Complex within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg602 b:0.2 occ:1.00 MG 1:CLA602 0.0 0.2 1.0 ND 1:CLA602 2.0 0.6 1.0 NB 1:CLA602 2.0 0.8 1.0 NC 1:CLA602 2.1 0.6 1.0 NA 1:CLA602 2.2 0.8 1.0 C4D 1:CLA602 2.9 0.3 1.0 C4B 1:CLA602 3.0 0.2 1.0 C1C 1:CLA602 3.1 0.3 1.0 C1B 1:CLA602 3.1 0.9 1.0 C1D 1:CLA602 3.1 0.7 1.0 C4A 1:CLA602 3.2 0.8 1.0 C1A 1:CLA602 3.2 0.2 1.0 C4C 1:CLA602 3.2 0.8 1.0 CHC 1:CLA602 3.3 0.1 1.0 CHA 1:CLA602 3.5 0.4 1.0 CHB 1:CLA602 3.5 0.8 1.0 CHD 1:CLA602 3.5 0.9 1.0 ND2 1:ASN180 3.7 0.5 1.0 C3D 1:CLA602 4.2 0.9 1.0 C3B 1:CLA602 4.2 1.0 1.0 C2B 1:CLA602 4.3 0.0 1.0 C2D 1:CLA602 4.3 0.8 1.0 C2C 1:CLA602 4.4 0.4 1.0 C3C 1:CLA602 4.4 0.0 1.0 C3A 1:CLA602 4.5 0.9 1.0 C2A 1:CLA602 4.5 0.5 1.0 CG 1:ASN180 4.6 0.8 1.0 C20 1:LUT501 4.7 0.6 1.0 CBD 1:CLA602 4.9 0.8 1.0

Magnesium binding site 3 out of 143 in the Dunaliella Minimal Psi Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Dunaliella Minimal Psi Complex within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg603 b:95.2 occ:1.00 MG 1:CLA603 0.0 95.2 1.0 ND 1:CLA603 2.0 94.3 1.0 NB 1:CLA603 2.1 96.2 1.0 NC 1:CLA603 2.1 94.3 1.0 NA 1:CLA603 2.2 96.2 1.0 C4D 1:CLA603 2.9 94.5 1.0 C4B 1:CLA603 3.0 96.1 1.0 C1C 1:CLA603 3.0 94.5 1.0 C1B 1:CLA603 3.1 97.1 1.0 C1D 1:CLA603 3.1 93.6 1.0 C4A 1:CLA603 3.2 97.1 1.0 C4C 1:CLA603 3.2 93.5 1.0 C1A 1:CLA603 3.2 96.1 1.0 CHC 1:CLA603 3.3 95.3 1.0 CHA 1:CLA603 3.4 95.2 1.0 CHB 1:CLA603 3.5 97.5 1.0 CHD 1:CLA603 3.5 93.2 1.0 O2A 1:CLA603 4.0 93.7 1.0 C3D 1:CLA603 4.1 93.9 1.0 C3B 1:CLA603 4.2 97.0 1.0 C2B 1:CLA603 4.3 97.6 1.0 C2D 1:CLA603 4.3 93.3 1.0 CBB 1:CLA615 4.4 91.6 1.0 C2C 1:CLA603 4.4 93.9 1.0 C3C 1:CLA603 4.4 93.3 1.0 C3A 1:CLA603 4.5 97.7 1.0 C2A 1:CLA603 4.5 97.0 1.0 CA 1:GLY190 4.5 96.6 1.0 O 1:GLY190 4.5 97.3 1.0 CMD 1:CLA608 4.6 95.2 1.0 CGA 1:CLA603 4.8 94.5 1.0 CBD 1:CLA603 4.9 95.0 1.0 C 1:GLY190 5.0 97.5 1.0

Magnesium binding site 4 out of 143 in the Dunaliella Minimal Psi Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Dunaliella Minimal Psi Complex within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg604 b:95.7 occ:1.00 MG 1:CLA604 0.0 95.7 1.0 ND 1:CLA604 2.0 95.6 1.0 NB 1:CLA604 2.0 95.9 1.0 NC 1:CLA604 2.1 95.7 1.0 NA 1:CLA604 2.2 95.8 1.0 OE2 1:GLU75 2.8 97.8 1.0 C4D 1:CLA604 2.9 95.6 1.0 C4B 1:CLA604 3.0 96.0 1.0 C1C 1:CLA604 3.0 95.9 1.0 C1B 1:CLA604 3.1 96.1 1.0 C1D 1:CLA604 3.1 95.6 1.0 C4A 1:CLA604 3.2 96.0 1.0 C1A 1:CLA604 3.2 95.7 1.0 C4C 1:CLA604 3.2 95.7 1.0 CHC 1:CLA604 3.3 96.0 1.0 C18 1:XAT502 3.4 93.0 1.0 CHA 1:CLA604 3.4 95.6 1.0 CHB 1:CLA604 3.5 96.1 1.0 CHD 1:CLA604 3.5 95.7 1.0 CD 1:GLU75 3.7 98.8 1.0 CG 1:GLU75 3.8 98.8 1.0 C3D 1:CLA604 4.2 95.6 1.0 C3B 1:CLA604 4.2 96.3 1.0 C2B 1:CLA604 4.3 96.4 1.0 C2D 1:CLA604 4.3 95.6 1.0 C2C 1:CLA604 4.4 96.0 1.0 C3C 1:CLA604 4.4 95.9 1.0 C3A 1:CLA604 4.5 96.1 1.0 C2A 1:CLA604 4.5 95.8 1.0 NH2 1:ARG182 4.7 98.7 1.0 NE 1:ARG182 4.8 98.9 1.0 C5 1:XAT502 4.8 91.9 1.0 OE1 1:GLU75 4.8 99.8 1.0 CBD 1:CLA604 4.9 95.6 1.0 CZ 1:ARG182 4.9 98.6 1.0

Magnesium binding site 5 out of 143 in the Dunaliella Minimal Psi Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Dunaliella Minimal Psi Complex within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg605 b:98.1 occ:1.00 MG 1:CLA605 0.0 98.1 1.0 ND 1:CLA605 2.0 99.7 1.0 NB 1:CLA605 2.1 96.7 1.0 NC 1:CLA605 2.1 99.5 1.0 NA 1:CLA605 2.2 97.0 1.0 C4D 1:CLA605 2.9 99.6 1.0 C4B 1:CLA605 3.0 96.9 1.0 C1C 1:CLA605 3.1 99.2 1.0 C1B 1:CLA605 3.1 95.6 1.0 C1D 1:CLA605 3.1 0.9 1.0 NE2 1:HIS78 3.2 99.8 1.0 C1A 1:CLA605 3.2 97.3 1.0 C4A 1:CLA605 3.2 95.8 1.0 C4C 1:CLA605 3.2 0.8 1.0 CHC 1:CLA605 3.3 98.0 1.0 CHA 1:CLA605 3.4 98.7 1.0 CHB 1:CLA605 3.5 95.2 1.0 CHD 1:CLA605 3.5 0.5 1.0 C10 1:CLA612 3.6 98.4 1.0 CD2 1:HIS78 4.0 100.0 1.0 C8 1:CLA612 4.0 98.5 1.0 CE1 1:HIS78 4.1 0.3 1.0 C3D 1:CLA605 4.1 0.8 1.0 C3B 1:CLA605 4.3 95.7 1.0 C2D 1:CLA605 4.3 0.7 1.0 C9 1:CLA612 4.3 97.1 1.0 C2B 1:CLA605 4.3 95.0 1.0 C2C 1:CLA605 4.4 0.3 1.0 C3C 1:CLA605 4.4 0.3 1.0 C2A 1:CLA605 4.5 96.4 1.0 C3A 1:CLA605 4.5 95.3 1.0 CBD 1:CLA605 4.9 99.3 1.0

Magnesium binding site 6 out of 143 in the Dunaliella Minimal Psi Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Dunaliella Minimal Psi Complex within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg606 b:0.3 occ:1.00 MG 1:CLA606 0.0 0.3 1.0 ND 1:CLA606 2.0 0.9 1.0 NB 1:CLA606 2.0 0.9 1.0 NC 1:CLA606 2.1 0.4 1.0 NA 1:CLA606 2.2 0.6 1.0 C4D 1:CLA606 2.9 0.7 1.0 C4B 1:CLA606 3.0 0.3 1.0 C1C 1:CLA606 3.0 0.5 1.0 C1B 1:CLA606 3.1 0.4 1.0 C1D 1:CLA606 3.1 0.7 1.0 C1A 1:CLA606 3.2 0.6 1.0 C4A 1:CLA606 3.2 0.9 1.0 C4C 1:CLA606 3.2 0.2 1.0 C27 1:BCR503 3.2 0.1 1.0 CHC 1:CLA606 3.3 0.6 1.0 CHA 1:CLA606 3.5 0.6 1.0 CHB 1:CLA606 3.5 0.9 1.0 CHD 1:CLA606 3.5 0.2 1.0 C38 1:BCR503 3.6 0.6 1.0 C26 1:BCR503 3.7 0.5 1.0 C3D 1:CLA606 4.2 0.9 1.0 C24 1:XAT502 4.2 0.0 1.0 C3B 1:CLA606 4.2 0.3 1.0 C2B 1:CLA606 4.3 0.4 1.0 C2D 1:CLA606 4.3 0.9 1.0 C2C 1:CLA606 4.4 0.8 1.0 CBA 1:CLA606 4.4 0.3 1.0 C3C 1:CLA606 4.4 0.9 1.0 C2A 1:CLA606 4.5 0.7 1.0 C3A 1:CLA606 4.5 0.4 1.0 C28 1:BCR503 4.6 0.0 1.0 C25 1:BCR503 4.8 0.9 1.0 CBD 1:CLA606 4.9 0.8 1.0 O23 1:XAT502 4.9 0.6 1.0

Magnesium binding site 7 out of 143 in the Dunaliella Minimal Psi Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Dunaliella Minimal Psi Complex within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg607 b:0.4 occ:1.00 MG 1:CLA607 0.0 0.4 1.0 ND 1:CLA607 2.0 0.8 1.0 NB 1:CLA607 2.0 0.1 1.0 NC 1:CLA607 2.1 0.0 1.0 NA 1:CLA607 2.2 0.1 1.0 C4D 1:CLA607 2.9 0.9 1.0 O4 1:LHG801 3.0 0.4 1.0 C4B 1:CLA607 3.0 0.1 1.0 C1C 1:CLA607 3.1 0.2 1.0 C1B 1:CLA607 3.1 0.7 1.0 C1D 1:CLA607 3.1 0.4 1.0 C4A 1:CLA607 3.2 0.5 1.0 C1A 1:CLA607 3.2 0.0 1.0 C4C 1:CLA607 3.2 0.7 1.0 CHC 1:CLA607 3.3 0.3 1.0 CHA 1:CLA607 3.5 0.9 1.0 O5 1:LHG801 3.5 0.0 1.0 CHB 1:CLA607 3.5 0.8 1.0 CHD 1:CLA607 3.5 0.3 1.0 P 1:LHG801 3.6 0.6 1.0 C4 1:LHG801 4.0 0.5 1.0 C3D 1:CLA607 4.2 0.2 1.0 C3B 1:CLA607 4.3 0.2 1.0 O6 1:LHG801 4.3 0.4 1.0 C2B 1:CLA607 4.3 0.1 1.0 C2D 1:CLA607 4.3 0.2 1.0 C2C 1:CLA607 4.4 0.3 1.0 C3C 1:CLA607 4.4 0.6 1.0 C3A 1:CLA607 4.5 0.7 1.0 C2A 1:CLA607 4.5 0.1 1.0 C6 1:LHG801 4.9 98.6 1.0 C5 1:LHG801 4.9 99.2 1.0 CMD 1:CLA602 4.9 0.2 1.0 CBD 1:CLA607 4.9 1.0 1.0 O7 1:LHG801 5.0 99.3 1.0

Magnesium binding site 8 out of 143 in the Dunaliella Minimal Psi Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Dunaliella Minimal Psi Complex within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg608 b:97.6 occ:1.00 MG 1:CLA608 0.0 97.6 1.0 ND 1:CLA608 2.0 96.5 1.0 NB 1:CLA608 2.0 99.0 1.0 NC 1:CLA608 2.1 99.1 1.0 NA 1:CLA608 2.2 96.1 1.0 NE2 1:HIS209 2.8 98.5 1.0 C4D 1:CLA608 2.9 95.2 1.0 C4B 1:CLA608 3.0 0.4 1.0 C1C 1:CLA608 3.0 0.5 1.0 C1B 1:CLA608 3.1 98.9 1.0 C1D 1:CLA608 3.1 96.6 1.0 C1A 1:CLA608 3.2 94.9 1.0 C4C 1:CLA608 3.2 99.0 1.0 C4A 1:CLA608 3.2 96.4 1.0 CHC 1:CLA608 3.3 0.0 1.0 CHA 1:CLA608 3.4 94.4 1.0 CHB 1:CLA608 3.5 97.7 1.0 CHD 1:CLA608 3.5 97.9 1.0 CE1 1:HIS209 3.6 97.5 1.0 CD2 1:HIS209 3.8 99.5 1.0 C3D 1:CLA608 4.1 94.6 1.0 C3B 1:CLA608 4.3 0.2 1.0 C2D 1:CLA608 4.3 95.5 1.0 C2B 1:CLA608 4.3 0.2 1.0 C2C 1:CLA608 4.4 0.4 1.0 C3C 1:CLA608 4.4 0.5 1.0 C2A 1:CLA608 4.5 94.2 1.0 C3A 1:CLA608 4.5 95.3 1.0 ND1 1:HIS209 4.7 98.0 1.0 CG 1:HIS209 4.9 99.2 1.0 CBD 1:CLA608 4.9 93.2 1.0

Magnesium binding site 9 out of 143 in the Dunaliella Minimal Psi Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Dunaliella Minimal Psi Complex within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg609 b:92.2 occ:1.00 MG 1:CHL609 0.0 92.2 1.0 NB 1:CHL609 2.0 91.7 1.0 ND 1:CHL609 2.0 92.8 1.0 NC 1:CHL609 2.0 93.8 1.0 NA 1:CHL609 2.0 90.7 1.0 O 1:PHE37 2.8 92.8 1.0 C4D 1:CHL609 2.9 92.1 1.0 C1C 1:CHL609 2.9 94.2 1.0 C4B 1:CHL609 3.0 92.5 1.0 C1A 1:CHL609 3.0 90.4 1.0 C4A 1:CHL609 3.1 89.9 1.0 C1B 1:CHL609 3.1 90.8 1.0 C4C 1:CHL609 3.2 94.8 1.0 C1D 1:CHL609 3.2 93.8 1.0 CHC 1:CHL609 3.2 93.5 1.0 CHA 1:CHL609 3.4 91.1 1.0 CHB 1:CHL609 3.5 89.9 1.0 CHD 1:CHL609 3.6 94.8 1.0 C3 1:CHL609 3.7 92.7 1.0 C 1:PHE37 3.8 92.9 1.0 C2 1:CHL609 4.1 91.7 1.0 C3D 1:CHL609 4.2 92.7 1.0 C2C 1:CHL609 4.2 95.4 1.0 C3B 1:CHL609 4.2 92.0 1.0 C4 1:CHL609 4.2 93.1 1.0 C2B 1:CHL609 4.3 91.0 1.0 C3C 1:CHL609 4.3 95.8 1.0 C2D 1:CHL609 4.3 93.8 1.0 O2A 1:CHL609 4.3 90.7 1.0 CA 1:PHE37 4.4 93.6 1.0 C2A 1:CHL609 4.4 89.3 1.0 C3A 1:CHL609 4.4 89.0 1.0 CB 1:PHE37 4.5 92.9 1.0 CD2 1:PHE37 4.6 91.0 1.0 N 1:ALA38 4.8 92.5 1.0 CBD 1:CHL609 4.9 90.9 1.0 C1 1:CHL609 4.9 90.9 1.0 CBA 1:CHL609 5.0 89.9 1.0

Magnesium binding site 10 out of 143 in the Dunaliella Minimal Psi Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Dunaliella Minimal Psi Complex within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg610 b:0.5 occ:1.00 MG 1:CHL610 0.0 0.5 1.0 NB 1:CHL610 2.0 0.1 1.0 NC 1:CHL610 2.0 0.6 1.0 NA 1:CHL610 2.1 0.6 1.0 ND 1:CHL610 2.1 0.1 1.0 C1C 1:CHL610 2.9 0.5 1.0 C4D 1:CHL610 2.9 0.4 1.0 C4B 1:CHL610 2.9 0.7 1.0 C1A 1:CHL610 3.0 0.6 1.0 C4A 1:CHL610 3.1 0.1 1.0 C1B 1:CHL610 3.1 0.6 1.0 CHC 1:CHL610 3.1 0.2 1.0 C4C 1:CHL610 3.2 0.2 1.0 C1D 1:CHL610 3.2 0.7 1.0 CHA 1:CHL610 3.3 0.9 1.0 CHB 1:CHL610 3.5 0.7 1.0 CHD 1:CHL610 3.6 0.7 1.0 C3D 1:CHL610 4.2 0.6 1.0 C2C 1:CHL610 4.2 0.1 1.0 C3B 1:CHL610 4.2 0.6 1.0 C2B 1:CHL610 4.3 0.3 1.0 C3C 1:CHL610 4.3 0.1 1.0 C2D 1:CHL610 4.3 0.1 1.0 C2A 1:CHL610 4.4 0.1 1.0 C3A 1:CHL610 4.4 0.1 1.0 CG 1:PRO104 4.6 0.9 1.0 CBD 1:CHL610 4.8 0.1 1.0

A.Perez Boerema, D.Klaiman, I.Caspy, S.Netzer-El, A.Amunts, N.Nelson. Structure of A Minimal Photosystem I From A Green Alga To Be Published.