Magnesium in PDB 6qrj: Crystal Structure of Shka Full-Length in Complex with Amppnp

The structure of Crystal Structure of Shka Full-Length in Complex with Amppnp, PDB code: 6qrj was solved by B.N.Dubey, T.Schirmer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.65
Space group	P 43 2 2
Cell size a, b, c (Å), α, β, γ (°)	64.504, 64.504, 260.209, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 27.5

The binding sites of Magnesium atom in the Crystal Structure of Shka Full-Length in Complex with Amppnp (pdb code 6qrj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Shka Full-Length in Complex with Amppnp, PDB code: 6qrj:

Magnesium binding site 1 out of 1 in the Crystal Structure of Shka Full-Length in Complex with Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Shka Full-Length in Complex with Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:75.3 occ:1.00 O A:HOH701 1.7 58.7 1.0 O1B A:ANP601 2.0 69.0 1.0 OD1 A:ASN139 2.2 63.5 1.0 O3G A:ANP601 2.4 72.3 1.0 O2A A:ANP601 3.0 64.8 1.0 O2G A:ANP601 3.2 73.0 1.0 NZ A:LYS142 3.4 76.8 1.0 PB A:ANP601 3.4 71.8 1.0 CG A:ASN139 3.4 61.1 1.0 PG A:ANP601 3.5 70.2 1.0 N3B A:ANP601 3.9 71.7 1.0 CE A:LYS142 3.9 72.8 1.0 ND2 A:ASN139 4.1 62.9 1.0 O3A A:ANP601 4.1 72.7 1.0 PA A:ANP601 4.1 69.6 1.0 CA A:ASN139 4.5 59.4 1.0 CB A:ASN139 4.5 59.8 1.0 O2B A:ANP601 4.6 72.5 1.0 N A:ASN139 4.7 56.1 1.0 O1G A:ANP601 4.7 74.8 1.0 O A:ASN135 4.9 54.1 1.0 O5' A:ANP601 5.0 68.4 1.0

B.N.Dubey, E.Agustoni, R.Bohm, A.Kaczmarczyk, F.Mangia, C.Von Arx, U.Jenal, S.Hiller, I.Plaza-Menacho, T.Schirmer. Hybrid Histidine Kinase Activation By Cyclic Di-Gmp-Mediated Domain Liberation. Proc.Natl.Acad.Sci.Usa 2019.
ISSN: ESSN 1091-6490
PubMed: 31882446
DOI: 10.1073/PNAS.1911427117