Magnesium in PDB 6qs8: Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B

The binding sites of Magnesium atom in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B (pdb code 6qs8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B, PDB code: 6qs8:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:31.7 occ:1.00 O2G A:AGS1001 2.1 40.0 1.0 OG1 A:THR213 2.1 33.6 1.0 O1A A:AGS1001 3.3 40.0 1.0 O1B A:AGS1001 3.3 40.0 1.0 CB A:THR213 3.3 33.6 1.0 PG A:AGS1001 3.6 40.0 1.0 O3G A:AGS1001 4.1 40.0 1.0 N A:THR213 4.2 33.6 1.0 CG2 A:THR213 4.2 33.6 1.0 PA A:AGS1001 4.3 40.0 1.0 CA A:THR213 4.3 33.6 1.0 PB A:AGS1001 4.4 40.0 1.0 O3B A:AGS1001 4.4 40.0 1.0 O2A A:AGS1001 4.5 40.0 1.0 OD2 A:ASP278 4.6 16.9 1.0 S1G A:AGS1001 4.7 40.0 1.0 O3A A:AGS1001 4.9 40.0 1.0 CB A:ASP278 4.9 16.9 1.0

Magnesium binding site 2 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1003 b:7.1 occ:1.00 O2G B:AGS1001 2.1 7.5 1.0 O1B B:AGS1001 2.1 7.5 1.0 OG1 B:THR213 2.2 14.6 1.0 CB B:THR213 3.4 14.6 1.0 PB B:AGS1001 3.5 7.5 1.0 PG B:AGS1001 3.5 7.5 1.0 NH1 A:ARG332 3.7 8.2 1.0 O3B B:AGS1001 4.0 7.5 1.0 O1A B:AGS1001 4.1 7.5 1.0 CG2 B:THR213 4.1 14.6 1.0 O3A B:AGS1001 4.2 7.5 1.0 O3G B:AGS1001 4.3 7.5 1.0 N B:THR213 4.4 14.6 1.0 CA B:THR213 4.5 14.6 1.0 PA B:AGS1001 4.5 7.5 1.0 O2B B:AGS1001 4.6 7.5 1.0 O2A B:AGS1001 4.6 7.5 1.0 OD2 B:ASP278 4.7 6.5 1.0 CZ A:ARG332 4.8 8.2 1.0 NH2 A:ARG331 4.9 8.8 1.0 S1G B:AGS1001 4.9 7.5 1.0

Magnesium binding site 3 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1004 b:25.8 occ:1.00 O1B B:AGS1002 2.1 35.0 1.0 OG1 B:THR612 2.1 24.2 1.0 O2G B:AGS1002 2.3 35.0 1.0 CB B:THR612 3.3 24.2 1.0 OD1 B:ASP677 3.4 16.4 1.0 PB B:AGS1002 3.4 35.0 1.0 PG B:AGS1002 3.7 35.0 1.0 O3A B:AGS1002 3.9 35.0 1.0 OD2 B:ASP677 4.0 16.4 1.0 CG B:ASP677 4.1 16.4 1.0 CG2 B:THR612 4.1 24.2 1.0 O3B B:AGS1002 4.1 35.0 1.0 N B:THR612 4.3 24.2 1.0 O1A B:AGS1002 4.3 35.0 1.0 CA B:THR612 4.4 24.2 1.0 PA B:AGS1002 4.5 35.0 1.0 O2A B:AGS1002 4.5 35.0 1.0 O2B B:AGS1002 4.6 35.0 1.0 NH2 B:ARG815 4.6 41.5 1.0 O3G B:AGS1002 4.6 35.0 1.0 OG1 B:THR717 4.7 12.3 1.0 NH2 A:ARG756 4.7 44.0 1.0

Magnesium binding site 4 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1003 b:20.2 occ:1.00 O1B C:AGS1001 2.1 31.2 1.0 OG1 C:THR213 2.1 18.0 1.0 O2G C:AGS1001 2.1 31.2 1.0 CB C:THR213 3.4 18.0 1.0 PB C:AGS1001 3.5 31.2 1.0 PG C:AGS1001 3.6 31.2 1.0 O3B C:AGS1001 4.0 31.2 1.0 O1A C:AGS1001 4.0 31.2 1.0 CG2 C:THR213 4.1 18.0 1.0 O3A C:AGS1001 4.2 31.2 1.0 N C:THR213 4.3 18.0 1.0 S1G C:AGS1001 4.4 31.2 1.0 CA C:THR213 4.4 18.0 1.0 NH1 B:ARG332 4.5 31.2 1.0 O2B C:AGS1001 4.5 31.2 1.0 OD2 C:ASP278 4.6 5.5 1.0 O3G C:AGS1001 4.7 31.2 1.0 PA C:AGS1001 4.7 31.2 1.0

Magnesium binding site 5 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1004 b:7.5 occ:1.00 O2G C:AGS1002 2.1 9.8 1.0 O1B C:AGS1002 2.1 9.8 1.0 OG1 C:THR612 2.2 8.8 1.0 CB C:THR612 3.3 8.8 1.0 OD1 C:ASP677 3.5 8.9 1.0 PB C:AGS1002 3.5 9.8 1.0 OD2 C:ASP677 3.5 8.9 1.0 PG C:AGS1002 3.5 9.8 1.0 CG C:ASP677 3.9 8.9 1.0 CG2 C:THR612 4.0 8.8 1.0 O3B C:AGS1002 4.0 9.8 1.0 OD2 B:ASP695 4.1 10.4 1.0 O1A C:AGS1002 4.3 9.8 1.0 NH2 B:ARG756 4.4 15.9 1.0 O3A C:AGS1002 4.4 9.8 1.0 N C:THR612 4.4 8.8 1.0 S1G C:AGS1002 4.4 9.8 1.0 CA C:THR612 4.5 8.8 1.0 O2B C:AGS1002 4.5 9.8 1.0 O3G C:AGS1002 4.6 9.8 1.0 NH2 C:ARG815 4.8 13.6 1.0 PA C:AGS1002 4.8 9.8 1.0 OG1 C:THR717 4.9 9.9 1.0

Magnesium binding site 6 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg903 b:31.2 occ:1.00 O1B D:AGS901 2.1 8.8 1.0 O2G D:AGS901 2.1 8.8 1.0 OG1 D:THR213 2.1 10.2 1.0 PG D:AGS901 3.1 8.8 1.0 S1G D:AGS901 3.3 8.8 1.0 CB D:THR213 3.4 10.2 1.0 PB D:AGS901 3.4 8.8 1.0 O3B D:AGS901 3.8 8.8 1.0 NH1 C:ARG332 4.1 31.2 1.0 OD2 D:ASP278 4.2 11.6 1.0 CG2 D:THR213 4.2 10.2 1.0 N D:THR213 4.3 10.2 1.0 O2B D:AGS901 4.3 8.8 1.0 CA D:THR213 4.4 10.2 1.0 O3G D:AGS901 4.4 8.8 1.0 O3A D:AGS901 4.4 8.8 1.0 O1A D:AGS901 4.7 8.8 1.0 CB D:ASP278 5.0 11.6 1.0

Magnesium binding site 7 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg904 b:31.2 occ:1.00 O1B D:AGS902 2.0 7.5 1.0 OG1 D:THR612 2.3 10.2 1.0 OD1 D:ASP677 2.9 6.1 1.0 OD2 D:ASP677 3.5 6.1 1.0 PB D:AGS902 3.5 7.5 1.0 CB D:THR612 3.5 10.2 1.0 O2G D:AGS902 3.5 7.5 1.0 CG D:ASP677 3.6 6.1 1.0 O3G D:AGS902 4.1 7.5 1.0 CG2 D:THR612 4.2 10.2 1.0 O1A D:AGS902 4.2 7.5 1.0 O3A D:AGS902 4.2 7.5 1.0 PG D:AGS902 4.2 7.5 1.0 O3B D:AGS902 4.3 7.5 1.0 O2B D:AGS902 4.4 7.5 1.0 OG1 D:THR717 4.4 6.7 1.0 N D:THR612 4.6 10.2 1.0 CA D:THR612 4.6 10.2 1.0 NH2 C:ARG756 4.6 5.8 1.0 PA D:AGS902 4.7 7.5 1.0 OD2 C:ASP695 4.8 6.7 1.0 O2A D:AGS902 5.0 7.5 1.0 NH2 D:ARG815 5.0 8.1 1.0

Magnesium binding site 8 out of 8 in the Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Clpb (Dwb and K476C Mutant) Bound to Casein in Presence of Atpgammas - State Kc-2B within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1003 b:9.0 occ:1.00 O2G E:AGS1002 2.0 10.8 1.0 OG1 E:THR612 2.0 10.3 1.0 CB E:THR612 3.1 10.3 1.0 PG E:AGS1002 3.2 10.8 1.0 O3G E:AGS1002 3.3 10.8 1.0 OD1 E:ASP677 3.5 6.4 1.0 OD2 E:ASP677 3.5 6.4 1.0 O1A E:AGS1002 3.8 10.8 1.0 CG2 E:THR612 3.9 10.3 1.0 CG E:ASP677 3.9 6.4 1.0 N E:THR612 4.1 10.3 1.0 NH2 D:ARG756 4.1 7.0 1.0 CA E:THR612 4.2 10.3 1.0 O3B E:AGS1002 4.3 10.8 1.0 O3A E:AGS1002 4.4 10.8 1.0 OD2 D:ASP695 4.4 6.8 1.0 S1G E:AGS1002 4.4 10.8 1.0 PA E:AGS1002 4.4 10.8 1.0 O2A E:AGS1002 4.5 10.8 1.0 OG1 E:THR717 4.7 7.2 1.0 PB E:AGS1002 4.8 10.8 1.0 NH2 E:ARG815 4.9 10.6 1.0

C.Deville, K.Franke, A.Mogk, B.Bukau, H.R.Saibil. Two-Step Activation Mechanism of the Clpb Disaggregase For Sequential Substrate Threading By the Main Atpase Motor. Cell Rep V. 27 3433 2019.
ISSN: ESSN 2211-1247
PubMed: 31216466
DOI: 10.1016/J.CELREP.2019.05.075