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Magnesium in PDB 6qsq: X-Ray Crystal Structure of the R336L Vibrio Alkaline Phosphatase Variant.

Protein crystallography data

The structure of X-Ray Crystal Structure of the R336L Vibrio Alkaline Phosphatase Variant., PDB code: 6qsq was solved by J.G.Hjorleifsson, R.Helland, B.Asgeirsson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.43 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 98.082, 118.596, 83.922, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 21.8

Other elements in 6qsq:

The structure of X-Ray Crystal Structure of the R336L Vibrio Alkaline Phosphatase Variant. also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Crystal Structure of the R336L Vibrio Alkaline Phosphatase Variant. (pdb code 6qsq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Crystal Structure of the R336L Vibrio Alkaline Phosphatase Variant., PDB code: 6qsq:

Magnesium binding site 1 out of 1 in 6qsq

Go back to Magnesium Binding Sites List in 6qsq
Magnesium binding site 1 out of 1 in the X-Ray Crystal Structure of the R336L Vibrio Alkaline Phosphatase Variant.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Crystal Structure of the R336L Vibrio Alkaline Phosphatase Variant. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg604

b:24.3
occ:1.00
OD2 A:ASP12 2.0 21.5 1.0
OE2 A:GLU268 2.0 20.2 1.0
OG1 A:THR118 2.1 20.5 1.0
O A:HOH847 2.2 16.6 1.0
O A:HOH773 2.2 21.0 1.0
O A:HOH729 2.2 19.1 1.0
CG A:ASP12 3.0 19.8 1.0
CB A:THR118 3.1 22.0 1.0
CD A:GLU268 3.1 20.6 1.0
OE1 A:GLU268 3.5 20.6 1.0
CB A:ASP12 3.5 20.3 1.0
O A:HOH711 4.0 24.5 1.0
OD1 A:ASP12 4.1 24.8 1.0
CG2 A:THR118 4.1 21.1 1.0
ND1 A:HIS116 4.1 29.7 1.0
N A:THR118 4.1 21.9 1.0
O A:HOH738 4.1 19.6 1.0
CA A:THR118 4.2 21.6 1.0
OG A:SER65 4.2 27.5 1.0
CB A:SER65 4.3 26.2 1.0
CG A:GLU268 4.3 20.1 1.0
O1 A:SO4605 4.4 21.1 1.0
OD2 A:ASP315 4.6 22.7 1.0
O A:GLY270 4.6 21.9 1.0
CA A:GLY270 4.6 21.9 1.0
ZN A:ZN603 4.6 21.3 1.0
CE1 A:HIS116 4.7 29.5 1.0
CA A:ASP12 4.9 18.6 1.0

Reference:

J.G.Hjorleifsson, E.Papaleo, G.Invernizzi, R.Helland, M.Magnusdottir, B.Asgeirsson. Modulation of Activity and Stability of A Dimeric Cold-Adapted Enzyme By A Disordered Loop-Region at the Monomer-Monomer Interface To Be Published.
Page generated: Tue Oct 1 15:35:21 2024

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