Magnesium in PDB 6quy: Ngckk (N.Gruberi Ckk) Decorated 13PF Taxol-Gdp Microtubule

The binding sites of Magnesium atom in the Ngckk (N.Gruberi Ckk) Decorated 13PF Taxol-Gdp Microtubule (pdb code 6quy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Ngckk (N.Gruberi Ckk) Decorated 13PF Taxol-Gdp Microtubule, PDB code: 6quy:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Ngckk (N.Gruberi Ckk) Decorated 13PF Taxol-Gdp Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ngckk (N.Gruberi Ckk) Decorated 13PF Taxol-Gdp Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:62.3 occ:1.00 O1A A:GTP501 2.1 62.5 1.0 O3B A:GTP501 2.1 62.5 1.0 O1G A:GTP501 2.1 62.5 1.0 O2A A:GTP501 2.3 62.5 1.0 PA A:GTP501 2.4 62.5 1.0 PG A:GTP501 2.5 62.5 1.0 CB A:GLN11 2.6 76.7 1.0 N A:GLN11 2.7 76.7 1.0 O3A A:GTP501 2.8 62.5 1.0 PB A:GTP501 3.0 62.5 1.0 CA A:GLN11 3.2 76.7 1.0 O2G A:GTP501 3.5 62.5 1.0 OE1 A:GLN11 3.7 76.7 1.0 O3G A:GTP501 3.8 62.5 1.0 O1B A:GTP501 3.8 62.5 1.0 C A:GLY10 3.9 77.6 1.0 CG A:GLN11 4.0 76.7 1.0 O5' A:GTP501 4.0 62.5 1.0 CA A:GLY10 4.2 77.6 1.0 O2B A:GTP501 4.2 62.5 1.0 N A:ALA12 4.2 75.9 1.0 C A:GLN11 4.2 76.7 1.0 CD A:GLN11 4.3 76.7 1.0 OE2 A:GLU71 4.8 0.7 1.0 C5' A:GTP501 4.9 62.5 1.0 O A:GLY10 5.0 77.6 1.0

Magnesium binding site 2 out of 2 in the Ngckk (N.Gruberi Ckk) Decorated 13PF Taxol-Gdp Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ngckk (N.Gruberi Ckk) Decorated 13PF Taxol-Gdp Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:69.1 occ:1.00 O1B C:GTP501 2.1 68.4 1.0 O3G C:GTP501 2.1 68.4 1.0 OE2 C:GLU71 2.2 0.8 1.0 PG C:GTP501 2.5 68.4 1.0 O1G C:GTP501 2.6 68.4 1.0 O3B C:GTP501 2.8 68.4 1.0 PB C:GTP501 2.9 68.4 1.0 CD C:GLU71 3.0 0.8 1.0 CG C:GLU71 3.6 0.8 1.0 O2B C:GTP501 3.6 68.4 1.0 OE1 C:GLU71 3.8 0.8 1.0 O2G C:GTP501 4.0 68.4 1.0 O3A C:GTP501 4.3 68.4 1.0 OG1 C:THR145 4.3 0.0 1.0 OD1 C:ASP69 4.3 0.2 1.0 NZ G:LYS254 4.3 97.6 1.0 OD2 C:ASP98 4.4 0.9 1.0 CB C:ASP98 4.5 0.9 1.0 CB C:GLN11 4.5 90.8 1.0 N C:GLN11 4.7 90.8 1.0 CB C:THR145 4.8 0.0 1.0 OE1 C:GLN11 4.8 90.8 1.0 OD2 C:ASP69 4.9 0.2 1.0 CB C:GLU71 4.9 0.8 1.0 CG C:ASP98 5.0 0.9 1.0

J.Atherton, Y.Luo, S.Xiang, C.Yang, A.Rai, K.Jiang, M.Stangier, A.Vemu, A.D.Cook, S.Wang, A.Roll-Mecak, M.O.Steinmetz, A.Akhmanova, M.Baldus, C.A.Moores. Structural Determinants of Microtubule Minus End Preference in Camsap Ckk Domains. Nat Commun V. 10 5236 2019.
ISSN: ESSN 2041-1723
PubMed: 31748546
DOI: 10.1038/S41467-019-13247-6