Magnesium in PDB 6qve: Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule

The binding sites of Magnesium atom in the Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule (pdb code 6qve). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule, PDB code: 6qve:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:66.3 occ:1.00 O1G C:GTP501 2.1 69.8 1.0 OE2 C:GLU71 2.1 75.8 1.0 O1B C:GTP501 2.1 69.8 1.0 PG C:GTP501 2.6 69.8 1.0 O3B C:GTP501 2.6 69.8 1.0 CD C:GLU71 2.8 75.8 1.0 PB C:GTP501 2.9 69.8 1.0 O2G C:GTP501 3.0 69.8 1.0 OE1 C:GLU71 3.5 75.8 1.0 CG C:GLU71 3.6 75.8 1.0 OD2 C:ASP69 3.8 68.3 1.0 O3A C:GTP501 3.8 69.8 1.0 OE1 C:GLN11 4.0 55.7 1.0 OD1 C:ASP69 4.0 68.3 1.0 CB C:GLN11 4.1 55.7 1.0 O3G C:GTP501 4.1 69.8 1.0 OG1 C:THR145 4.1 66.0 1.0 O2B C:GTP501 4.1 69.8 1.0 NZ G:LYS254 4.3 74.9 1.0 CG C:ASP69 4.4 68.3 1.0 CB C:THR145 4.4 66.0 1.0 N C:GLN11 4.6 55.7 1.0 CB C:GLU71 4.8 75.8 1.0 CG2 C:THR145 4.9 66.0 1.0 C C:GLY10 4.9 56.4 1.0 CD C:GLN11 4.9 55.7 1.0 CA C:GLN11 4.9 55.7 1.0

Magnesium binding site 2 out of 2 in the Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:86.7 occ:1.00 O1B A:GTP501 2.1 94.4 1.0 O1G A:GTP501 2.2 94.4 1.0 O2G A:GTP501 2.3 94.4 1.0 OE2 A:GLU71 2.5 87.8 1.0 PG A:GTP501 2.5 94.4 1.0 PB A:GTP501 3.0 94.4 1.0 O3B A:GTP501 3.0 94.4 1.0 NZ H:LYS254 3.2 72.6 1.0 CD A:GLU71 3.4 87.8 1.0 O3A A:GTP501 3.6 94.4 1.0 OE1 A:GLN11 4.0 62.7 1.0 O3G A:GTP501 4.0 94.4 1.0 OE1 A:GLU71 4.1 87.8 1.0 CE H:LYS254 4.2 72.6 1.0 O2B A:GTP501 4.3 94.4 1.0 CG A:GLU71 4.3 87.8 1.0 CB A:GLN11 4.5 62.7 1.0 OG1 A:THR145 4.6 75.2 1.0 OD2 A:ASP98 4.8 90.8 1.0 CD H:LYS254 4.8 72.6 1.0 PA A:GTP501 4.9 94.4 1.0 CB A:ASP98 4.9 90.8 1.0

J.Atherton, Y.Luo, S.Xiang, C.Yang, A.Rai, K.Jiang, M.Stangier, A.Vemu, A.D.Cook, S.Wang, A.Roll-Mecak, M.O.Steinmetz, A.Akhmanova, M.Baldus, C.A.Moores. Structural Determinants of Microtubule Minus End Preference in Camsap Ckk Domains. Nat Commun V. 10 5236 2019.
ISSN: ESSN 2041-1723
PubMed: 31748546
DOI: 10.1038/S41467-019-13247-6