Magnesium in PDB 6qve: Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule (pdb code 6qve). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule, PDB code: 6qve:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6qve

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Magnesium binding site 1 out of 2 in the Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg502

b:66.3
occ:1.00
O1G C:GTP501 2.1 69.8 1.0
OE2 C:GLU71 2.1 75.8 1.0
O1B C:GTP501 2.1 69.8 1.0
PG C:GTP501 2.6 69.8 1.0
O3B C:GTP501 2.6 69.8 1.0
CD C:GLU71 2.8 75.8 1.0
PB C:GTP501 2.9 69.8 1.0
O2G C:GTP501 3.0 69.8 1.0
OE1 C:GLU71 3.5 75.8 1.0
CG C:GLU71 3.6 75.8 1.0
OD2 C:ASP69 3.8 68.3 1.0
O3A C:GTP501 3.8 69.8 1.0
OE1 C:GLN11 4.0 55.7 1.0
OD1 C:ASP69 4.0 68.3 1.0
CB C:GLN11 4.1 55.7 1.0
O3G C:GTP501 4.1 69.8 1.0
OG1 C:THR145 4.1 66.0 1.0
O2B C:GTP501 4.1 69.8 1.0
NZ G:LYS254 4.3 74.9 1.0
CG C:ASP69 4.4 68.3 1.0
CB C:THR145 4.4 66.0 1.0
N C:GLN11 4.6 55.7 1.0
CB C:GLU71 4.8 75.8 1.0
CG2 C:THR145 4.9 66.0 1.0
C C:GLY10 4.9 56.4 1.0
CD C:GLN11 4.9 55.7 1.0
CA C:GLN11 4.9 55.7 1.0

Magnesium binding site 2 out of 2 in 6qve

Go back to Magnesium Binding Sites List in 6qve
Magnesium binding site 2 out of 2 in the Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ngckk (Naegleria Gruberi Ckk) Decorated 14PF Taxol-Gdp Microtubule within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:86.7
occ:1.00
O1B A:GTP501 2.1 94.4 1.0
O1G A:GTP501 2.2 94.4 1.0
O2G A:GTP501 2.3 94.4 1.0
OE2 A:GLU71 2.5 87.8 1.0
PG A:GTP501 2.5 94.4 1.0
PB A:GTP501 3.0 94.4 1.0
O3B A:GTP501 3.0 94.4 1.0
NZ H:LYS254 3.2 72.6 1.0
CD A:GLU71 3.4 87.8 1.0
O3A A:GTP501 3.6 94.4 1.0
OE1 A:GLN11 4.0 62.7 1.0
O3G A:GTP501 4.0 94.4 1.0
OE1 A:GLU71 4.1 87.8 1.0
CE H:LYS254 4.2 72.6 1.0
O2B A:GTP501 4.3 94.4 1.0
CG A:GLU71 4.3 87.8 1.0
CB A:GLN11 4.5 62.7 1.0
OG1 A:THR145 4.6 75.2 1.0
OD2 A:ASP98 4.8 90.8 1.0
CD H:LYS254 4.8 72.6 1.0
PA A:GTP501 4.9 94.4 1.0
CB A:ASP98 4.9 90.8 1.0

Reference:

J.Atherton, Y.Luo, S.Xiang, C.Yang, A.Rai, K.Jiang, M.Stangier, A.Vemu, A.D.Cook, S.Wang, A.Roll-Mecak, M.O.Steinmetz, A.Akhmanova, M.Baldus, C.A.Moores. Structural Determinants of Microtubule Minus End Preference in Camsap Ckk Domains. Nat Commun V. 10 5236 2019.
ISSN: ESSN 2041-1723
PubMed: 31748546
DOI: 10.1038/S41467-019-13247-6
Page generated: Mon Dec 14 23:54:46 2020

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