Atomistry » Magnesium » PDB 6r5k-6rde » 6r5p
Atomistry »
  Magnesium »
    PDB 6r5k-6rde »
      6r5p »

Magnesium in PDB 6r5p: The Crystal Structure of Glycoside Hydrolase Bglx Inactive Mutant D286N From P. Aeruginosa in Complex with Glucose

Protein crystallography data

The structure of The Crystal Structure of Glycoside Hydrolase Bglx Inactive Mutant D286N From P. Aeruginosa in Complex with Glucose, PDB code: 6r5p was solved by M.T.Batuecas, J.A.Hermoso, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.16 / 2.85
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 70.713, 73.624, 81.509, 65.38, 73.41, 69.89
R / Rfree (%) 17.3 / 22.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of Glycoside Hydrolase Bglx Inactive Mutant D286N From P. Aeruginosa in Complex with Glucose (pdb code 6r5p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of Glycoside Hydrolase Bglx Inactive Mutant D286N From P. Aeruginosa in Complex with Glucose, PDB code: 6r5p:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6r5p

Go back to Magnesium Binding Sites List in 6r5p
Magnesium binding site 1 out of 2 in the The Crystal Structure of Glycoside Hydrolase Bglx Inactive Mutant D286N From P. Aeruginosa in Complex with Glucose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Glycoside Hydrolase Bglx Inactive Mutant D286N From P. Aeruginosa in Complex with Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg802

b:37.3
occ:1.00
O B:HOH907 1.9 36.8 1.0
O B:HOH904 2.3 23.5 1.0
O B:VAL694 2.7 34.4 1.0
OD1 B:ASP692 2.7 43.3 1.0
O B:PRO742 3.2 48.8 1.0
CG B:ASP692 3.7 43.3 1.0
C B:VAL694 3.9 36.5 1.0
O B:GLU741 3.9 52.5 1.0
O B:GLU744 3.9 43.9 1.0
OD2 B:ASP692 3.9 47.0 1.0
C B:PRO742 3.9 50.8 1.0
CA B:GLY743 4.0 46.5 1.0
C B:GLY743 4.2 46.0 1.0
N B:GLY743 4.2 49.0 1.0
N B:GLU744 4.3 45.4 1.0
C B:GLU741 4.4 52.8 1.0
CB B:GLU741 4.4 52.8 1.0
CE2 B:PHE745 4.6 47.0 1.0
CZ B:PHE745 4.6 47.5 1.0
CA B:VAL694 4.7 38.2 1.0
CB B:VAL694 4.7 38.0 1.0
O B:GLY743 4.8 46.7 1.0
N B:VAL694 4.8 40.3 1.0
OE1 B:GLU741 4.8 54.0 1.0
N B:ALA695 4.8 36.0 1.0
C B:GLU744 4.9 46.6 1.0

Magnesium binding site 2 out of 2 in 6r5p

Go back to Magnesium Binding Sites List in 6r5p
Magnesium binding site 2 out of 2 in the The Crystal Structure of Glycoside Hydrolase Bglx Inactive Mutant D286N From P. Aeruginosa in Complex with Glucose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Glycoside Hydrolase Bglx Inactive Mutant D286N From P. Aeruginosa in Complex with Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:37.3
occ:1.00
O A:HOH914 2.3 34.4 1.0
OD1 A:ASP692 2.3 46.1 1.0
O A:HOH910 2.5 38.1 1.0
O A:VAL694 2.5 36.2 1.0
CG A:ASP692 3.4 48.7 1.0
O A:GLU744 3.6 46.1 1.0
C A:VAL694 3.7 37.0 1.0
O A:PRO742 3.7 47.5 1.0
OD2 A:ASP692 3.8 52.9 1.0
CA A:GLY743 4.1 47.6 1.0
N A:GLU744 4.2 49.1 1.0
C A:GLY743 4.2 47.8 1.0
O A:GLU741 4.2 38.9 1.0
C A:PRO742 4.3 47.3 1.0
CA A:VAL694 4.5 37.6 1.0
N A:VAL694 4.5 38.5 1.0
CZ A:PHE745 4.5 51.5 1.0
N A:GLY743 4.5 46.8 1.0
CE2 A:PHE745 4.5 52.4 1.0
CB A:VAL694 4.6 37.8 1.0
C A:GLU744 4.7 48.3 1.0
N A:ALA695 4.7 36.9 1.0
CB A:ASP692 4.7 46.6 1.0
O A:GLY743 4.8 46.5 1.0
CB A:GLU741 4.8 44.2 1.0
C A:GLU741 4.8 43.5 1.0
CA A:ALA695 4.9 37.5 1.0
OE1 A:GLU741 5.0 44.8 1.0

Reference:

K.V.Mahasenan, M.T.Batuecas, S.De Benedetti, C.Kim, N.Rana, M.Lee, D.Hesek, J.F.Fisher, J.Sanz-Aparicio, J.A.Hermoso, S.Mobashery. Catalytic Cycle of Glycoside Hydrolase Bglx Frompseudomonas Aeruginosaand Its Implications For Biofilm Formation. Acs Chem.Biol. V. 15 189 2020.
ISSN: ESSN 1554-8937
PubMed: 31877028
DOI: 10.1021/ACSCHEMBIO.9B00754
Page generated: Tue Oct 1 16:37:29 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy