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Magnesium in PDB 6raj: Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Open Conformation

Other elements in 6raj:

The structure of Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Open Conformation also contains other interesting chemical elements:

Vanadium (V) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Open Conformation (pdb code 6raj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Open Conformation, PDB code: 6raj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6raj

Go back to Magnesium Binding Sites List in 6raj
Magnesium binding site 1 out of 2 in the Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg703

b:54.6
occ:1.00
OG1 A:THR400 2.0 50.6 1.0
O2B A:AOV701 2.0 55.8 1.0
O3G A:AOV701 2.0 55.8 1.0
OE1 A:GLN441 2.0 57.7 1.0
CD A:GLN441 3.1 57.7 1.0
CB A:THR400 3.1 50.6 1.0
PB A:AOV701 3.1 55.8 1.0
O1B A:AOV701 3.2 55.8 1.0
VG A:AOV701 3.8 55.8 1.0
CG A:GLN441 3.9 57.7 1.0
O3B A:AOV701 3.9 55.8 1.0
NE2 A:GLN441 3.9 57.7 1.0
CG2 A:THR400 4.0 50.6 1.0
OD2 A:ASP522 4.0 58.0 1.0
CA A:THR400 4.2 50.6 1.0
N A:THR400 4.2 50.6 1.0
CB A:GLN441 4.2 57.7 1.0
O1A A:AOV701 4.3 55.8 1.0
O3A A:AOV701 4.4 55.8 1.0
OD1 A:ASP522 4.4 58.0 1.0
O4G A:AOV701 4.5 55.8 1.0
CG A:ASP522 4.6 58.0 1.0
N B:GLY477 4.7 52.1 1.0
O2G A:AOV701 4.8 55.8 1.0
O1G A:AOV701 4.9 55.8 1.0

Magnesium binding site 2 out of 2 in 6raj

Go back to Magnesium Binding Sites List in 6raj
Magnesium binding site 2 out of 2 in the Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Heterodimeric Abc Exporter Tmrab in Vanadate Trapped Outward-Facing Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:53.7
occ:1.00
OE1 B:GLN419 2.3 56.8 1.0
O1B A:ATP702 2.3 57.4 1.0
O3G A:ATP702 2.4 57.4 1.0
NE2 B:GLN419 2.4 56.8 1.0
OG B:SER378 2.5 50.5 1.0
CD B:GLN419 2.5 56.8 1.0
PG A:ATP702 3.3 57.4 1.0
CB B:SER378 3.4 50.5 1.0
PB A:ATP702 3.4 57.4 1.0
O3B A:ATP702 3.5 57.4 1.0
O1G A:ATP702 3.7 57.4 1.0
CG B:GLN419 3.9 56.8 1.0
OD2 B:ASP499 4.1 55.5 1.0
OD2 B:ASP500 4.2 57.7 1.0
O2B A:ATP702 4.2 57.4 1.0
N B:SER378 4.5 50.5 1.0
CA B:SER378 4.5 50.5 1.0
OG A:SER498 4.5 55.2 1.0
O3A A:ATP702 4.7 57.4 1.0
O2G A:ATP702 4.7 57.4 1.0
CB B:GLN419 4.7 56.8 1.0
CB A:THR499 4.9 55.3 1.0
OG1 A:THR499 4.9 55.3 1.0
CG B:ASP499 4.9 55.5 1.0
O2A A:ATP702 5.0 57.4 1.0
CG B:ASP500 5.0 57.7 1.0

Reference:

S.Hofmann, D.Januliene, A.R.Mehdipour, C.Thomas, E.Stefan, S.Bruchert, B.T.Kuhn, E.R.Geertsma, G.Hummer, R.Tampe, A.Moeller. Conformation Space of A Heterodimeric Abc Exporter Under Turnover Conditions. Nature V. 571 580 2019.
ISSN: ESSN 1476-4687
PubMed: 31316210
DOI: 10.1038/S41586-019-1391-0
Page generated: Mon Dec 14 23:56:25 2020

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